Browse Element(s) Details


Os.14747.1.S1_at

Description gb:AK064816.1
DB_XREF= gi:32974834
TID=Os.14747.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14747 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000E13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000E13, full insert sequence.
FL= gb:AK064816.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4689011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46840OsAffx.30517.1.S1_at3/116+28432908..28433447pentatricopeptide, putative
LOC_Os06g46840Os.44826.1.S1_at1/116+28432908..28433447pentatricopeptide, putative
LOC_Os06g46850OsAffx.25502.2.S1_at4/116+28433792..28435210retrotransposon protein, putative, unclassified
LOC_Os06g46850Os.47130.4.A1_x_at1/116+28433792..28435210retrotransposon protein, putative, unclassified
LOC_Os06g46860OsAffx.28141.1.S1_at10/116+28439984..28443176hypothetical protein
LOC_Os06g46860OsAffx.988.1.S1_at1/116+28439984..28443176hypothetical protein
LOC_Os06g46870OsAffx.15958.1.S1_at11/116+28447781..28448967Protease inhibitor/seed storage/LTP family protein
LOC_Os06g46880OsAffx.15959.1.S1_s_at11/116+28451973..28455564Surp module family protein, expressed
LOC_Os06g46890Os.14747.1.S1_at11/116+28456955..28462486expressed protein
LOC_Os06g46900Os.11106.1.S1_at11/116+28462800..28465239phosphosulfolactate synthase-related protein, putative, expressed
LOC_Os06g46910Os.50189.1.S1_at11/116+28466986..28470156zinc finger family protein, putative, expressed
LOC_Os06g46910Os.50189.2.S1_at11/116+28466986..28470156zinc finger family protein, putative, expressed
LOC_Os06g46920Os.52555.1.S1_at11/116+28469176..28471150NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g46930Os.7589.1.S1_at11/116+28471589..2847378150S ribosomal protein L24, chloroplast precursor, putative, expressed
LOC_Os06g46940Os.49601.1.S1_at9/116+28476209..28479889Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os06g46950Os.7902.1.S1_at11/116+28482814..28483492EF-hand Ca2+-binding protein CCD1, putative, expressed
LOC_Os06g46960NANA6+28486836..28487644RNase H domain-containing protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14747.1.S1_at--529--5351Chr06:28458086..28458110 (25 bp)
GAAGATGCTCTAGAACCTTTTCAGA
LOC_Os06g46890
Os.14747.1.S1_at--395--8171Chr06:28457295..28457319 (25 bp)
GGAACATGCGTTCATTGCCATGCCA
LOC_Os06g46890
Os.14747.1.S1_at--550--591Chr06:28457276..28457300 (25 bp)
ATGCCAGTTGCGTTTTCACAGACTA
LOC_Os06g46890
Os.14747.1.S1_at--259--4791Chr06:28457238..28457262 (25 bp)
GCTGCCAGCCTGTTATTTATCTTAA
LOC_Os06g46890
Os.14747.1.S1_at--792--2711Chr06:28457181..28457205 (25 bp)
AAGCATCTCGATAACTTCTGTGGCG
LOC_Os06g46890
Os.14747.1.S1_at--326--2491Chr06:28457134..28457158 (25 bp)
AACAGGTTATTCTCACATTTGGGCA
LOC_Os06g46890
Os.14747.1.S1_at--1141--1951Chr06:28457108..28457132 (25 bp)
ACTGTGCGTCGTTATTACCATGGAT
LOC_Os06g46890
Os.14747.1.S1_at--330--751Chr06:28457062..28457086 (25 bp)
ATGTATCTGGCAGCCTATTCGAGTT
LOC_Os06g46890
Os.14747.1.S1_at--495--3831Chr06:28456991..28457015 (25 bp)
CTGCGATCTTTAGCGTCTGTGTTAC
LOC_Os06g46890
Os.14747.1.S1_at--777--8671Chr06:28456974..28456998 (25 bp)
TGTGTTACTACAGCATCCCATGGTT
LOC_Os06g46890
Os.14747.1.S1_at--928--531Chr06:28456960..28456984 (25 bp)
ATCCCATGGTTTCACTCGGCATGAA
LOC_Os06g46890
Target Sequence 
GAAGATGCTCTAGAACCTTTTCAGAGCAGCNAGGGAACTGAGGCAAAAGAACTATTATCTGTGAAGAAGAATTTGGGGGA
TGGTGACAACAATGAGAAAGGAAATGTTGTTTCTTCTGCAAATGTTTTTACAGATAGGTATGAGGGCGGTGATGATGANG
ATGTTCTTGTNGACTAGTAAATTCATGCAGATGGAGATTGACAAAGATTTCAGCAGTAAGGAGTAGGGTGAAGTATGGAA
CATGCGTTCATTGCCATGCCAGTTGCGTTTTCACAGACTAACCTGAAACTAAGGCTGCCAGCCTGTTATTTATCTTAATG
TATCATTTAATACACCGGGCATTAGGAATTAAGCATCTCGATAACTTCTGTGGCGAAGACGAGTTGCATTGTTCTCAAAC
AGGTTATTCTCACATTTGGGCAAACTGTGCGTCGTTATTACCATGGATTCCAAGTAGCCTGTATGGATAATGTATCTGGC
AGCCTATTCGAGTTAGGTTTGGTATTCATGGATTCATCATTGTGTTGTAAATTTGTAATGCTGCGATCTTTAGCGTCTGT
GTTACTACAGCATCCCATGGTTTCACTCGGCATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14747.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis