Browse Element(s) Details


Os.14873.1.S1_at

Description gb:AK120247.1
DB_XREF= gi:37989870
TID=Os.14873.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14873 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013044M10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013044M10, full insert sequence.
FL= gb:AK120247.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0215010/11Saposin-like type B, region 1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02090OsAffx.18633.1.S1_at11/1111+565282..567861expressed protein
LOC_Os11g02090OsAffx.18633.2.S1_at9/1111+565282..567861expressed protein
LOC_Os11g02090OsAffx.18633.1.S1_s_at3/1111+565282..567861expressed protein
LOC_Os11g02100Os.55595.1.S1_at11/1111+570322..572021Cationic peroxidase 1 precursor, putative, expressed
LOC_Os11g02110Os.50351.1.S1_s_at11/1111+572572..573727expressed protein
LOC_Os11g02110Os.50351.1.S1_at11/1111+572572..573727expressed protein
LOC_Os11g02120Os.46459.1.S1_at1/1111+578798..580488transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g02130Os.11549.1.S1_at2/1111+582211..584405Peroxidase 52 precursor, putative, expressed
LOC_Os11g02140NANA11+589587..589874hypothetical protein
LOC_Os11g02150Os.14873.1.S1_at10/1111+591079..593754Saposin-like type B, region 1 family protein, expressed
LOC_Os11g02170OsAffx.19452.1.S1_x_at11/1111+600257..600898expressed protein
LOC_Os11g02180Os.5998.1.S1_at5/1111+601590..605844Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os11g02190Os.35188.1.S1_at5/1111+609006..614403expressed protein
LOC_Os11g02200OsAffx.18634.1.S1_at11/1111+617440..619126expressed protein
LOC_Os11g02200Os.46014.1.S1_s_at5/1111+617440..619126expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14873.1.S1_at--489--6472Chr12:628782..628806 (25 bp)
GATACCTGTAACTCTTCTGAGGAGC
NONE
Os.14873.1.S1_at--1115--1572Chr12:628813..628837 (25 bp)
AGCTCACTGTGCTCGGCTTGTGAAA
NONE
Os.14873.1.S1_at--144--971Chr11:592599..592623 (25 bp)
AGGACGATCCTTCATGACACTTGTT
LOC_Os11g02150
Os.14873.1.S1_at--173--3632Chr12:628913..628937 (25 bp)
CTTGTTCTCAGACATTCTCCTTTGA
NONE
Os.14873.1.S1_at--584--2031Chr11:592850..592874 (25 bp)
ACTATGGACTCCTATGCAACTCTTG
LOC_Os11g02150
Os.14873.1.S1_at--425--9151NONE
TGCGTTCTGCGCAGCAGTGCAAGAG
NONE
Os.14873.1.S1_at--146--992Chr12:629602..629621 (20 bp)
AGGATGGTTCTGCAGTACGTACCGC
NONE
Os.14873.1.S1_at--62--3451Chr11:593332..593356 (25 bp)
CAGTACGTACCGCTGGTTCTGGTGA
LOC_Os11g02150
Os.14873.1.S1_at--1058--8692Chr12:629669..629693 (25 bp)
TGTGCGCAATGATCCAAGCCTGTGA
NONE
Os.14873.1.S1_at--134--951Chr11:593422..593446 (25 bp)
AGGAAGGCACTCAACTTGTTCTCTG
LOC_Os11g02150
Os.14873.1.S1_at--564--2072Chr11:593618..593642 (25 bp)
ACTTGTGCTGCTATCTGAATTCTGA
LOC_Os11g02150
Target Sequence 
GATACCTGTAACTCTTCTGAGGAGCAAGCACAGCTCACTGTGCTCGGCTTGTGAAAACATCACAAGTGAAGCTGTCAATT
TTCTTAGTGAAAAACAAATACAAGATAAGATAAGGACGATCCTTCATGACACTTGTTCTCAGACATTCTCCTTTGAGCAA
AAGTGTCTTGAGACTATGGACTCCTATGCAACTCTTGTCTTTGCAAAAATTGCTGAGATCAAGCCAGCTGCGTTCTGCGC
AGCAGTGCAAGAGGATGGTTCTGCAGTACGTACCGCTGGTTCTGGTGAACGGTGAGAAGTTCCTGGAGAAGAACGATGTG
TGCGCAATGATCCAAGCCTGTGATGCAGGCAAGAGGAAGGCACTCAACTTGTTCTCTGCACGGAAATTGGTGCGTGACGC
ATGAAGTAGTAGGAAGCGTGCGTACACGAATCAAGTTGTGGTAGGCATGGAGAAGACGAAGTGATGGCAGCTTGTACATA
TGGTTATTATTAATGAAATATTAGGCAATACACTATGTGAAGGGGATGATACGATAATTATGTGCACATACTTGTGCTGC
TATCTGAATTCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14873.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis