Browse Element(s) Details


Os.14911.1.S1_at

Description gb:AK100508.1
DB_XREF= gi:32985717
TID=Os.14911.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.14911 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023099M05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023099M05, full insert sequence.
FL= gb:AK100508.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1648011/11ATPase, AFG1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16440OsAffx.29313.1.S1_at1/118+10061926..10063600transposon protein, putative, Mutator sub-class
LOC_Os08g16450OsAffx.5841.1.S1_at11/118+10065520..10065849NBS-LRR disease resistance protein, putative
LOC_Os08g16460OsAffx.5842.1.S1_at11/118+10071081..10075054NB-ARC domain containing protein
LOC_Os08g16470Os.27458.1.A1_at3/118+10079140..10081794expressed protein
LOC_Os08g16480Os.14911.1.S1_at11/118+10088535..10098829ATPase, AFG1 family protein, expressed
LOC_Os08g16480Os.47481.1.S1_at1/118+10088535..10098829ATPase, AFG1 family protein, expressed
LOC_Os08g16490OsAffx.29234.1.S1_x_at11/118+10101933..10102841hypothetical protein
LOC_Os08g16490OsAffx.29234.1.S1_at11/118+10101933..10102841hypothetical protein
LOC_Os08g16490OsAffx.5018.1.S1_at1/118+10101933..10102841hypothetical protein
LOC_Os08g16490OsAffx.12942.2.S1_at1/118+10101933..10102841hypothetical protein
LOC_Os08g16500NANA8+10103422..10104715hypothetical protein
LOC_Os08g16510OsAffx.31869.1.S1_at8/118+10108515..10109630retrotransposon protein, putative, unclassified
LOC_Os08g16510OsAffx.31869.5.S1_x_at5/118+10108515..10109630retrotransposon protein, putative, unclassified
LOC_Os08g16510OsAffx.31869.3.S1_s_at3/118+10108515..10109630retrotransposon protein, putative, unclassified
LOC_Os08g16510OsAffx.31869.3.S1_x_at3/118+10108515..10109630retrotransposon protein, putative, unclassified
LOC_Os08g16510OsAffx.31869.2.S1_at1/118+10108515..10109630retrotransposon protein, putative, unclassified
LOC_Os08g16510OsAffx.31869.4.S1_x_at1/118+10108515..10109630retrotransposon protein, putative, unclassified
LOC_Os08g16520OsAffx.7527.1.S1_x_at1/118+10111005..10112326hypothetical protein
LOC_Os08g16530Os.1924.1.S1_at2/118+10113176..10117227transposon protein, putative, unclassified
LOC_Os08g16530OsAffx.10632.1.S1_at1/118+10113176..10117227transposon protein, putative, unclassified
LOC_Os08g16540NANA8+10117480..10120552retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g16550OsAffx.16318.1.S1_x_at1/118+10120725..10121714hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14911.1.S1_at--746--1011Chr08:10096972..10096996 (25 bp)
AGGTTATTATGTACAGCAGACGCTG
LOC_Os08g16480
Os.14911.1.S1_at--397--5051Chr08:10096987..10097011 (25 bp)
GCAGACGCTGCACCAATAGAACTAT
LOC_Os08g16480
Os.14911.1.S1_at--738--2231Chr08:10097045..10097069 (25 bp)
AAATTTCTCCTAGATCTTCACGGTC
LOC_Os08g16480
Os.14911.1.S1_at--322--6411Chr08:10097057..10097081 (25 bp)
GATCTTCACGGTCGCAGAAAACTGA
LOC_Os08g16480
Os.14911.1.S1_at--1011--2551Chr08:10097076..10097100 (25 bp)
AACTGATGATCCTGACTTGTGTGTG
LOC_Os08g16480
Os.14911.1.S1_at--256--8531Chr08:10097099..10097123 (25 bp)
TGGACAATGAGCTAGGATTTGCCAA
LOC_Os08g16480
Os.14911.1.S1_at--710--5411Chr08:10097269..10097293 (25 bp)
GAAATTGCGACAGCCCTTACAAGGT
LOC_Os08g16480
Os.14911.1.S1_at--389--171Chr08:10097445..10097469 (25 bp)
ATTTTGCAAACAGGCGGGTCATCCA
LOC_Os08g16480
Os.14911.1.S1_at--638--8811Chr08:10097499..10097523 (25 bp)
TGTTGTTCGTTCTTCTGAAACCTGT
LOC_Os08g16480
Os.14911.1.S1_at--545--5551Chr08:10097515..10097539 (25 bp)
GAAACCTGTGTTGTGTCTTTTTGCC
LOC_Os08g16480
Os.14911.1.S1_at--123--3771Chr08:10097542..10097566 (25 bp)
CTCTCACTTTCTATTCCCATGTATA
LOC_Os08g16480
Target Sequence 
AGGTTATTATGTACAGCAGACGCTGCACCAATAGAACTATTTGAGAATATAGTGACAGTTGCTGAAGCACGAAAAATTTC
TCCTAGATCTTCACGGTCGCAGAAAACTGATGATCCTGACTTGTGTGTGGACAATGAGCTAGGATTTGCCAAGGATCGAA
CAATTAGTAGGTTGACAGAGATCAACAGTAGAGAGTACTTGGAGGACTTTGAAGCGAAATTGCGACAGCCCTTACAAGGT
GTAGATAATGATATTGATGTTGTACTAGNGTAAGTAGCAGCAAATTGTCTGGTATGAATTANGTCTACCCTCCTGGCTTT
ACAAAATGAAGAAAGAAAATGTTGGTTTTCCAACATTGGTGCATGTAAATTTGCAATAAGCCCCGTAAGAAATTTTGCAA
ACAGGCGGGTCATCCATAAAGTGTAACACCTGTAGAGAAGAAAAATGTTGTTCGTTCTTCTGAAACCTGTGTTGTGTCTT
TTTGCCTCCTCTCACTTTCTATTCCCATGTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14911.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis