Browse Element(s) Details


Os.14948.1.S1_at

Description gb:AK067895.1
DB_XREF= gi:32977913
TID=Os.14948.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14948 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1092_A07.25 (OJ1092_A07.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013123G12, full insert sequence.
FL= gb:AK067784.1 gb:AK067895.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3809011/11Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38050OsAffx.22479.1.S1_x_at11/117+22814061..22815137hypothetical protein
LOC_Os07g38060Os.33891.1.S1_at11/117+22815501..22820481expressed protein
LOC_Os07g38070Os.27184.1.S1_at11/117+22825252..22829829Nodulation receptor kinase precursor, putative, expressed
LOC_Os07g38070Os.44458.1.A1_x_at11/117+22825252..22829829Nodulation receptor kinase precursor, putative, expressed
LOC_Os07g38080Os.35731.1.S1_at11/117+22830169..22835541expressed protein
LOC_Os07g38080Os.35731.3.S1_x_at11/117+22830169..22835541expressed protein
LOC_Os07g38080Os.35731.2.S1_x_at4/117+22830169..22835541expressed protein
LOC_Os07g38090Os.14948.1.S1_at11/117+22839292..22842243Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os07g38100OsAffx.20985.1.S1_at11/117+22843358..22848027TB2/DP1, HVA22 family protein, expressed
LOC_Os07g38110Os.9633.1.S1_a_at11/117+22849663..22852221Tic20, putative, expressed
LOC_Os07g38120Os.12666.1.S1_at11/117+22856901..22860879Calcium-dependent protein kinase, isoform AK1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005737cellular_componentcytoplasm
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14948.1.S1_at--1148--2211Chr07:22841671..22841695 (25 bp)
ACAAGGCATGCCTGGTACTTCTGCA
LOC_Os07g38090
Os.14948.1.S1_at--425--9071Chr07:22841692..22841716 (25 bp)
TGCATTGATGAACAGGCCTGACCTG
LOC_Os07g38090
Os.14948.1.S1_at--500--8851Chr07:22841748..22841772 (25 bp)
TGATCGGTGCTTGGCTTGAGCAGAT
LOC_Os07g38090
Os.14948.1.S1_at--260--8911Chr07:22841764..22841788 (25 bp)
TGAGCAGATGCACCTGGATCAGAAG
LOC_Os07g38090
Os.14948.1.S1_at--158--7511Chr07:22841820..22841844 (25 bp)
GTGGATGAAGCCTTTATTTTGCCAA
LOC_Os07g38090
Os.14948.1.S1_at--454--2511Chr07:22841953..22841977 (25 bp)
AACATTTGGTCACAGATTGGTAGCT
LOC_Os07g38090
Os.14948.1.S1_at--585--10091Chr07:22841995..22842019 (25 bp)
TTGGTAAACAACCTCATTACTTGGG
LOC_Os07g38090
Os.14948.1.S1_at--225--7711Chr07:22842018..22842042 (25 bp)
GGGTCCTAACTAGTATTCTTTTGAT
LOC_Os07g38090
Os.14948.1.S1_at--220--9831Chr07:22842073..22842097 (25 bp)
TAAAATTCATATGTTCCCCATGGTT
LOC_Os07g38090
Os.14948.1.S1_at--494--151Chr07:22842098..22842122 (25 bp)
ATTATGTCCATGATCTCTTCCTAAC
LOC_Os07g38090
Os.14948.1.S1_at--36--6771Chr07:22842210..22842234 (25 bp)
GTTCAATGGAATTACCTTCCTTGGT
LOC_Os07g38090
Target Sequence 
ACAAGGCATGCCTGGTACTTCTGCATTGATGAACAGGCCTGACCTGAACAATNCAGGGTGACTTGTTGGACCAGACGGTG
ATCGGTGCTTGGCTTGAGCAGATGCACCTGGATCAGAAGTGATTTCCNAAGGGAAGCCATGAAGTCCCAAAGTGGATGAA
GCCTTTATTTTGCCAAGGTTATTTACCNAAGAATAGTTGTTGGTCCTAGTAAATAATAATTTATTCNTTTTTAATTCTTG
AAATTTTTGGTGGGCAAAGTCAGAGATGGTGGTCAAGTTCAACAAAACATTTGGTCACAGATTGGTAGCTGAAATCAGTT
CCAGAGATTGGTAAACAACCTCATTACTTGGGGTCCTAACTAGTATTCTTTTGATTAGCTCAGATGAGTCTTTATTTTAG
TGGGTTAAAATTCATATGTTCCCCATGGTTATTATGTCCATGATCTCTTCCTAACNAAAGAGAGATTATAATTGTCCNNT
TTTCATTTATCAATGAATGATTTTGTTAAAACANATGTAAGTTACATTCTTAATTTTTTCTCTGTTCAATGGAATTACCT
TCCTTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14948.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis