Browse Element(s) Details


Os.14983.1.S2_a_at

Description gb:AK121149.1
DB_XREF= gi:37990772
TID=Os.14983.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14983 (NCBI UniGene Cluster)
UG_TITLE=MRNA for SMC5 protein
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078H05, full insert sequence.
FL= gb:AK121149.1 gb:AK107823.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5179011/11structural maintenance of chromosomes family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51770OsAffx.22947.1.S1_x_at6/115+29620348..29624911retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g51770OsAffx.22947.2.S1_x_at5/115+29620348..29624911retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g51770OsAffx.22947.3.S1_x_at4/115+29620348..29624911retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g51770OsAffx.22947.5.S1_x_at2/115+29620348..29624911retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g51770OsAffx.22947.5.S1_at1/115+29620348..29624911retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g51780Os.23058.1.S1_at11/115+29634938..29636421Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g51790Os.14983.1.S1_a_at11/115+29644885..29657503structural maintenance of chromosomes family protein, putative, expressed
LOC_Os05g51790Os.14983.1.S2_a_at11/115+29644885..29657503structural maintenance of chromosomes family protein, putative, expressed
LOC_Os05g51800OsAffx.27409.1.S1_at11/115+29659567..29662333peptidyl-tRNA hydrolase family protein, putative
LOC_Os05g51800OsAffx.27409.1.S1_x_at11/115+29659567..29662333peptidyl-tRNA hydrolase family protein, putative
LOC_Os05g51800Os.24682.1.A1_at2/115+29659567..29662333peptidyl-tRNA hydrolase family protein, putative
LOC_Os05g51810OsAffx.18284.3.S1_at9/115+29665047..29666047hypothetical protein
LOC_Os05g51820OsAffx.15202.1.S1_at11/115+29666475..29667253Helix-loop-helix DNA-binding domain containing protein
LOC_Os05g51830Os.8519.1.S1_a_at11/115+29670091..29671678Histone deacetylase 2b, putative, expressed
LOC_Os05g51840NANA5+29671797..29673033Histone deacetylase 2a, putative, expressed
LOC_Os05g51850Os.12748.2.S1_x_at11/115+29675947..29678145AT hook motif family protein, expressed
LOC_Os05g51850Os.12748.1.S1_at11/115+29675947..29678145AT hook motif family protein, expressed
LOC_Os05g51860OsAffx.4685.1.S1_at10/115+29679907..29683767hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007059biological_processchromosome segregation
GO:0005634cellular_componentnucleus
GO:0008278cellular_componentcohesin complex
GO:0005215molecular_functiontransporter activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14983.1.S2_a_at--152--951Chr05:29645989..29646013 (25 bp)
AGGAAGATGTTCCAGCAGCTTGTGA
LOC_Os05g51790
Os.14983.1.S2_a_at--423--4931Chr05:29645972..29645996 (25 bp)
GCTTGTGAGAGCAGCCAGTCAGCCA
LOC_Os05g51790
Os.14983.1.S2_a_at--366--1171Chr05:29645959..29645980 (22 bp)
AGTCAGCCAAACACTCCACAGTGCT
LOC_Os05g51790
Os.14983.1.S2_a_at--833--8931Chr05:29645843..29645867 (25 bp)
TGACGCCCAAGTTGCTGCCTGATTT
LOC_Os05g51790
Os.14983.1.S2_a_at--1076--6671Chr05:29645833..29645857 (25 bp)
GTTGCTGCCTGATTTGGAATATAGT
LOC_Os05g51790
Os.14983.1.S2_a_at--215--651Chr05:29645807..29645831 (25 bp)
ATGCATGCAGCATCCTAAATATCAT
LOC_Os05g51790
Os.14983.1.S2_a_at--659--2251Chr05:29645791..29645815 (25 bp)
AAATATCATGAATGGCCCATGGATT
LOC_Os05g51790
Os.14983.1.S2_a_at--543--8411Chr05:29645778..29645802 (25 bp)
GGCCCATGGATTGAGAAGCCAGCTA
LOC_Os05g51790
Os.14983.1.S2_a_at--610--1571Chr05:29645338..29645782 (25 bp)
AGCTAAAGCCTGGAGCACCGGTGAT
LOC_Os05g51790
Os.14983.1.S2_a_at--783--5931Chr05:29645326..29645350 (25 bp)
GAGCACCGGTGATTGCTGGAGAACA
LOC_Os05g51790
Os.14983.1.S2_a_at--939--2131Chr05:29645304..29645328 (25 bp)
ACAGTAATGAGCGTGAGTGGGCACT
LOC_Os05g51790
Target Sequence 
AGGAAGATGTTCCAGCAGCTTGTGAGAGCAGCCAGTCAGCCAAACACTCCACAGTGCTTCCTCCTGACGCCCAAGTTGCT
GCCTGATTTGGAATATAGTGATGCATGCAGCATCCTAAATATCATGAATGGCCCATGGATTGAGAAGCCAGCTAAAGCCT
GGAGCACCGGTGATTGCTGGAGAACAGTAATGAGCGTGAGTGGGCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14983.1.S2_a_at     

Putative homologies in rice

Putative homologies in arabidopsis