Browse Element(s) Details


Os.15045.1.S1_at

Description gb:AK068004.1
DB_XREF= gi:32978022
TID=Os.15045.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15045 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013129G21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013129G21, full insert sequence.
FL= gb:AK068004.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5679011/11TLD family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56740Os.5514.1.S1_at11/114+33620948..33626839IQ calmodulin-binding motif family protein, expressed
LOC_Os04g56750Os.6398.1.S1_at11/114+33629552..33634920Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os04g56760OsAffx.4196.1.S1_s_at11/114+33635333..33637490PHD finger-like domain protein 5A, putative, expressed
LOC_Os04g56770OsAffx.14441.1.S1_at10/114+33637664..33639994hypothetical protein
LOC_Os04g56780OsAffx.26640.1.S1_at11/114+33641309..33642359Homeobox domain containing protein
LOC_Os04g56790Os.15045.1.S1_at11/114+33650009..33653836TLD family protein, expressed
LOC_Os04g56800OsAffx.4197.1.S1_x_at10/114+33654393..33657050Peptidyl-prolyl cis-trans isomerase 1, putative, expressed
LOC_Os04g56810OsAffx.14442.1.S1_at11/114+33658435..33658926hypothetical protein
LOC_Os04g56820OsAffx.14443.1.S1_at11/114+33663112..33663546hypothetical protein
LOC_Os04g56830OsAffx.4198.1.S1_at11/114+33665745..33666089hypothetical protein
LOC_Os04g56840Os.57058.1.S1_at11/114+33666474..33667985expressed protein
LOC_Os04g56850Os.48513.1.S1_a_at11/114+33669062..33675333Auxin response factor family protein, expressed
LOC_Os04g56850Os.48513.2.S1_x_at11/114+33669062..33675333Auxin response factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15045.1.S1_at--362--6171Chr04:33650614..33650638 (25 bp)
GAGGATATTTTCTCAGAGCAGCGAA
LOC_Os04g56790
Os.15045.1.S1_at--56--291Chr04:33650331..33650355 (25 bp)
ATAGCTGCCTTAGTGCCAGTACATA
LOC_Os04g56790
Os.15045.1.S1_at--689--831Chr04:33650292..33650316 (25 bp)
ATGGACGATCTTGAGGTTTCATCTT
LOC_Os04g56790
Os.15045.1.S1_at--412--6831Chr04:33650277..33650301 (25 bp)
GTTTCATCTTTCTTGTACCTTGGAG
LOC_Os04g56790
Os.15045.1.S1_at--794--6931Chr04:33650240..33650264 (25 bp)
GTAGGTGCACATATTTGCTCCATTT
LOC_Os04g56790
Os.15045.1.S1_at--864--7551Chr04:33650208..33650232 (25 bp)
GGGCCATTTGACTGGGCAACACGTC
LOC_Os04g56790
Os.15045.1.S1_at--776--2571Chr04:33650134..33650158 (25 bp)
AACGGCATAGAGCTTCCTTTCTCAT
LOC_Os04g56790
Os.15045.1.S1_at--912--9611Chr04:33650113..33650137 (25 bp)
TCATGCTCCCCTTGTTTTATGGGAA
LOC_Os04g56790
Os.15045.1.S1_at--593--10811Chr04:33650054..33650078 (25 bp)
TTGTAGATTATTCCCGTGTCCAGAC
LOC_Os04g56790
Os.15045.1.S1_at--826--7451Chr04:33650039..33650063 (25 bp)
GTGTCCAGACTATCACACAGACATG
LOC_Os04g56790
Os.15045.1.S1_at--316--2191Chr04:33650025..33650049 (25 bp)
ACACAGACATGGTAATTTCCGATTA
LOC_Os04g56790
Target Sequence 
GAGGATATTTTCTCAGAGCAGCGAAGAAAAGTTGATCTCAAAACATTTGGCAATTGGGAGGACTCTCCAGAGAAAATGAT
GATGGACATGATTTCTGATCCNAATGCAGTTCGACGGGAGGACCGTTGAATACNATTTTGGACTATATGTTTATTATAGC
TCATTATCTAAAAAATGTTTATTATAGCTGCCTTAGTGCCAGTACATATCTGGACATGGGAAATGGACGATCTTGAGGTT
TCATCTTTCTTGTACCTTGGAGATATATAGAGGAGTAGGTGCACATATTTGCTCCATTTGATGTTTGGGCCATTTGACTG
GGCAACACGTCATGTAAGTATTGAATTGAAAAGAGTCTTGTATACAGAATATCGGTCTACAACGGCATAGAGCTTCCTTT
CTCATGCTCCCCTTGTTTTATGGGAATCGATAGCAAACAAATTTGTATCTGTATTGTAAATTGTAGATTATTCCCGTGTC
CAGACTATCACACAGACATGGTAATTTCCGATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15045.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis