Browse Element(s) Details


Os.15185.1.S1_s_at

Description gb:AU032431
DB_XREF= gi:3768404
DB_XREF=AU032431
CLONE=S10006_2Z
TID=Os.15185.1
CNT=7
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.15185 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_179284.1 (A.thaliana) putative ubiquitin-conjugating enzyme (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4839011/11Ubiquitin-conjugating enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48340Os.5594.1.S1_at11/115+27629080..27634433proteasome, putative, expressed
LOC_Os05g48350NANA5+27636556..27636801hypothetical protein
LOC_Os05g48360Os.37910.1.S1_at11/115+27640132..27644189MAC/Perforin domain containing protein, expressed
LOC_Os05g48370Os.15774.1.S1_at11/115+27646303..27648140expressed protein
LOC_Os05g48380Os.50544.1.S1_at11/115+27650625..27655048ubiquitin-conjugating enzyme E2, putative, expressed
LOC_Os05g48390Os.15185.1.S1_s_at11/115+27656755..27664453Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os05g48400OsAffx.4651.1.S1_at11/115+27666072..27666717hypothetical protein
LOC_Os05g48410Os.8883.1.S1_at11/115+27672841..2767585750S ribosomal protein L21, mitochondrial precursor, putative, expressed
LOC_Os05g48416Os.9873.1.S1_at11/115+27676281..27680377expressed protein
LOC_Os05g48422Os.49122.1.S1_at11/115+27681587..27683386ribosomal protein, putative, expressed
LOC_Os05g48430NANA5+27689003..27689218hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004840molecular_functionubiquitin conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15185.1.S1_s_at--925--10851Chr05:27657321..27657345 (25 bp)
TTGGACATGCTCGTGACAGCGCCTA
LOC_Os05g48390
Os.15185.1.S1_s_at--175--5651Chr05:27657307..27657331 (25 bp)
GACAGCGCCTATATATCGGATGACG
LOC_Os05g48390
Os.15185.1.S1_s_at--677--6311Chr05:27657289..27657313 (25 bp)
GATGACGGATGCAAGAACTCCTCAA
LOC_Os05g48390
Os.15185.1.S1_s_at--824--2691Chr05:27657241..27657265 (25 bp)
AAGCTCTTGCCGAAGCTTGTCACCA
LOC_Os05g48390
Os.15185.1.S1_s_at--1023--3371Chr05:27657191..27657215 (25 bp)
CAGCCCGTGACTCATGGCATTGTGA
LOC_Os05g48390
Os.15185.1.S1_s_at--1112--3231Chr05:27657089..27657113 (25 bp)
CAAGCTTTGTGACTTTGTGTATCCC
LOC_Os05g48390
Os.15185.1.S1_s_at--149--10851Chr05:27656978..27657002 (25 bp)
TTGGGTTTGTGGTCAGTTACTCAGT
LOC_Os05g48390
Os.15185.1.S1_s_at--69--3451Chr05:27656965..27656989 (25 bp)
CAGTTACTCAGTTCACGTGTGTTTT
LOC_Os05g48390
Os.15185.1.S1_s_at--894--4471Chr05:27656890..27656914 (25 bp)
GCCTGATTGCCTGTATAGCCTGACA
LOC_Os05g48390
Os.15185.1.S1_s_at--717--9991Chr05:27656875..27656899 (25 bp)
TAGCCTGACAGAGCAGCTATCTGCT
LOC_Os05g48390
Os.15185.1.S1_s_at--226--2031Chr05:27656839..27656863 (25 bp)
ACTACTACTGTACTGCTTTGTGAAA
LOC_Os05g48390
Target Sequence 
TTGGACATGCTCGTGACAGCGCCTATATATCGGATGACGGATGCAAGAACTCCTCAACCGGTTTCNAGATAATGCTANCC
AAGCTCTTGCCGAAGCTTGTCACCACCTTCTCTGAAGCCGGCATCCCCTGCAGCCCGTGACTCATGGCATTGTGAGTTTG
TGACACTGGACTACTGTGTATTTGTGACNAAATCGGGACACCANTATATGCTGTGTATGTACNTGTATATGTGCAAGCTT
TGTGACTTTGTGTATCCCNANANTAAAATGCTGCCNTGGTTTGTATGATACTTAANNNNTGGTGATGTCTGTTGTAACTT
GTAAGTGTGGTTGAGGCANCTGGTGTGNTTGGGTTTGTGGTCAGTTACTCAGTTCACGTGTGTTTTGAGCATGTGAAGTA
TGTAGATCTGCTTATCTGAAATTCTAANCANGTAGCTGCCTGATTGCCTGTATAGCCTGACAGAGCAGCTATCTGCTGTA
ATTGTACTACTACTACTGTACTGCTTTGTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15185.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis