Browse Element(s) Details


Os.15250.1.S1_at

Description gb:AK106063.1
DB_XREF= gi:32991272
TID=Os.15250.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15250 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-206-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-206-G07, full insert sequence.
FL= gb:AK106063.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2479011/11membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g24760Os.19048.1.S1_s_at11/118+14848609..14859237Pre-mRNA splicing factor RNA helicase, putative, expressed
LOC_Os08g24770OsAffx.29332.1.S1_at2/118+14864723..14865943Legume lectins beta domain containing protein, expressed
LOC_Os08g24770OsAffx.10096.1.S1_x_at1/118+14864723..14865943Legume lectins beta domain containing protein, expressed
LOC_Os08g24780OsAffx.13811.1.S1_at1/118+14870386..14873620Protein kinase domain containing protein
LOC_Os08g24790Os.15250.1.S1_at11/118+14875922..14876851membrane protein, putative, expressed
LOC_Os08g24800OsAffx.17134.1.S1_at10/118+14878319..14879689hypothetical protein
LOC_Os08g24810OsAffx.17135.1.S1_at11/118+14881776..14883404hypothetical protein
LOC_Os08g24820OsAffx.29333.1.S1_at11/118+14884090..14884524hypothetical protein
LOC_Os08g24830OsAffx.29334.1.S1_at11/118+14887061..14888317F-box domain containing protein
LOC_Os08g24840OsAffx.29335.1.S1_at10/118+14893742..14894269hypothetical protein
LOC_Os08g24850Os.45721.1.S1_s_at8/118+14898741..14899461hypothetical protein
LOC_Os08g24850Os.45721.1.S1_x_at1/118+14898741..14899461hypothetical protein
LOC_Os08g24850OsAffx.25377.2.S1_x_at1/118+14898741..14899461hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15250.1.S1_at--319--8091Chr08:14876498..14876522 (25 bp)
GGACCAAGTTCAACCACGTGTGGCA
LOC_Os08g24790
Os.15250.1.S1_at--371--9451Chr08:14876591..14876615 (25 bp)
TCGGCAGCATCGACTTCAGCAAGTG
LOC_Os08g24790
Os.15250.1.S1_at--796--5691Chr08:14876602..14876626 (25 bp)
GACTTCAGCAAGTGATCGATCGTAC
LOC_Os08g24790
Os.15250.1.S1_at--610--6391Chr08:14876615..14876639 (25 bp)
GATCGATCGTACATATATACTGGTA
LOC_Os08g24790
Os.15250.1.S1_at--486--1951Chr08:14876633..14876657 (25 bp)
ACTGGTATATACGTACACTTGTTCG
LOC_Os08g24790
Os.15250.1.S1_at--314--2171Chr08:14876647..14876671 (25 bp)
ACACTTGTTCGATCGTATACGTACG
LOC_Os08g24790
Os.15250.1.S1_at--13--4551Chr08:14876675..14876699 (25 bp)
GCCCGGCTGCTTGTAATGTTGGTAT
LOC_Os08g24790
Os.15250.1.S1_at--463--10351Chr08:14876732..14876756 (25 bp)
TTTATGCTTCTGGTAGATCGGCTCC
LOC_Os08g24790
Os.15250.1.S1_at--277--6411Chr08:14876747..14876771 (25 bp)
GATCGGCTCCCATTAGATGTGTGGA
LOC_Os08g24790
Os.15250.1.S1_at--574--6551Chr08:14876785..14876809 (25 bp)
GATTATGTCAGTGAGACTCCATGTA
LOC_Os08g24790
Os.15250.1.S1_at--726--1991Chr08:14876800..14876824 (25 bp)
ACTCCATGTATGTATTGTCTATATA
LOC_Os08g24790
Target Sequence 
GGACCAAGTTCAACCACGTGTGGCAGCAGGGCAGCTCGGTGGCCGGCGACGTGCCGGCGGCGCACCCCACCTCCGGGGAC
AACGTCCTCTCCGTCGGCAGCATCGACTTCAGCAAGTGATCGATCGTACATATATACTGGTATATACGTACACTTGTTCG
ATCGTATACGTACGTACGCCCGGCTGCTTGTAATGTTGGTATACAAGTATATTCATGTACACATGTGTTAATTATTTATG
CTTCTGGTAGATCGGCTCCCATTAGATGTGTGGAGTATATGTATGATGATTATGTCAGTGAGACTCCATGTATGTATTGT
CTATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15250.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis