Browse Element(s) Details


Os.15267.1.S1_at

Description gb:AK109706.1
DB_XREF= gi:32994915
TID=Os.15267.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15267 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-G05, full insert sequence.
FL= gb:AK109706.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5667011/11U3 small nucleolar ribonucleoprotein protein IMP3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56620OsAffx.14438.1.S1_x_at11/114+33542302..33545429Molybdopterin biosynthesis CNX1 protein, putative, expressed
LOC_Os04g56620Os.11269.1.S2_at10/114+33542302..33545429Molybdopterin biosynthesis CNX1 protein, putative, expressed
LOC_Os04g56620Os.57377.1.S1_at1/114+33542302..33545429Molybdopterin biosynthesis CNX1 protein, putative, expressed
LOC_Os04g56630Os.17581.1.A1_at10/114+33545898..33553313expressed protein
LOC_Os04g56640Os.39284.1.S1_s_at11/114+33555343..33558232MED7 protein, expressed
LOC_Os04g56654Os.5973.1.S1_at11/114+33558605..33564977Mov34/MPN/PAD-1 family protein, expressed
LOC_Os04g56654OsAffx.26639.1.S1_at10/114+33558605..33564977Mov34/MPN/PAD-1 family protein, expressed
LOC_Os04g56670Os.15267.1.S1_at11/114+33565295..33567400U3 small nucleolar ribonucleoprotein protein IMP3, putative, expressed
LOC_Os04g56680Os.55358.1.S1_at11/114+33570364..33571315Auxin responsive protein, expressed
LOC_Os04g56690Os.55720.1.S1_at11/114+33585356..33586405Auxin responsive protein, expressed
LOC_Os04g56700OsAffx.14440.1.S1_at10/114+33590548..33593234Naringenin,2-oxoglutarate 3-dioxygenase, putative

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15267.1.S1_at--275--5991Chr04:33565857..33565881 (25 bp)
GAGACTTACCATGGCTAACCACTTA
LOC_Os04g56670
Os.15267.1.S1_at--900--10171Chr04:33565824..33565848 (25 bp)
TATAACCTCGATTAGCACACAAGAC
LOC_Os04g56670
Os.15267.1.S1_at--442--5671Chr04:33565781..33565805 (25 bp)
GACATATCGTACATCACTTATTGCG
LOC_Os04g56670
Os.15267.1.S1_at--838--3951Chr04:33565734..33565758 (25 bp)
CGGAGGCTTGCAACAGTCATGGTGA
LOC_Os04g56670
Os.15267.1.S1_at--639--3731Chr04:33565707..33565731 (25 bp)
CTCAAGTTCGCGGAGCACCTTAAAG
LOC_Os04g56670
Os.15267.1.S1_at--886--1311Chr04:33565684..33565708 (25 bp)
AGAGGCCGTGACATACATACAGCAG
LOC_Os04g56670
Os.15267.1.S1_at--56--3571Chr04:33565669..33565693 (25 bp)
CATACAGCAGGGTCATGTGCGTGTA
LOC_Os04g56670
Os.15267.1.S1_at--970--7431Chr04:33565649..33565673 (25 bp)
GTGTAGGCCCAGAGACAGTCACCGA
LOC_Os04g56670
Os.15267.1.S1_at--837--3411Chr04:33565490..33565514 (25 bp)
CAGAATTTCTGGGTCCATCGGTGTA
LOC_Os04g56670
Os.15267.1.S1_at--482--8891Chr04:33565426..33565450 (25 bp)
TGAGGTCGTGATTTGCTGCAGAGCT
LOC_Os04g56670
Os.15267.1.S1_at--988--4751Chr04:33565412..33565436 (25 bp)
GCTGCAGAGCTACTTGCATGTGCAT
LOC_Os04g56670
Target Sequence 
GAGACTTACCATGGCTAACCACTTAACAAACACTATAACCTCGATTAGCACACAAGACTAAAGTTGTAGGAGATCAGACA
TATCGTACATCACTTATTGCGTGTATTGGCAAATTATTGCAGGCGGAGGCTTGCAACAGTCATGGTGAAGCTCAAGTTCG
CGGAGCACCTTAAAGAGGCCGTGACATACATACAGCAGGGTCATGTGCGTGTAGGCCCAGAGACAGTCACCGATCCAGCC
TTTCTTGTAACCAGGAACATGGAGGATTTCATCACCTGGGTTGACTCCTCAAAGATCAAGAGAAAGGTCCAGGAGTATAA
TGGTGAATTGGACGATTTTGATGCTATGGCTTGAGAATATCGTTGAGCAGAATTTCTGGGTCCATCGGTGTANCTACTCG
TGTATGATTTTTTTTTTTNNNGGAACTTTTTAAGGTGAGGTCGTGATTTGCTGCAGAGCTACTTGCATGTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15267.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis