Browse Element(s) Details


Os.15301.1.S1_at

Description gb:AK067803.1
DB_XREF= gi:32977821
TID=Os.15301.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15301 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013118G17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013118G17, full insert sequence.
FL= gb:AK067803.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2433011/11Plant specific eukaryotic initiation factor 4B family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g24300Os.45976.1.S1_x_at1/112+14094749..14095958transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g24310NANA2+14098100..14100094transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g24320NANA2+14102758..14105867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g24330Os.15301.1.S1_at11/112+14109885..14113511Plant specific eukaryotic initiation factor 4B family protein, expressed
LOC_Os02g24340OsAffx.12168.1.S1_at10/112+14115233..141180401-acyl-sn-glycerol-3-phosphate acyltransferase zeta precursor, putative
LOC_Os02g24354Os.12054.1.S1_at11/112+14118570..14126214diaminopimelate decarboxylase family protein, expressed
LOC_Os02g24370OsAffx.12169.1.S1_at11/112+14132525..14134066hypothetical protein
LOC_Os02g24370OsAffx.12169.1.S1_x_at10/112+14132525..14134066hypothetical protein
LOC_Os02g24370Os.27455.1.S1_x_at1/112+14132525..14134066hypothetical protein
LOC_Os02g24370OsAffx.11259.1.S1_at1/112+14132525..14134066hypothetical protein
LOC_Os02g24370OsAffx.19363.1.S1_at1/112+14132525..14134066hypothetical protein
LOC_Os02g24370Os.27455.1.S1_at1/112+14132525..14134066hypothetical protein
LOC_Os02g24380OsAffx.2727.1.S1_at8/112+14138340..14139351hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15301.1.S1_at--96--331Chr02:14112942..14112966 (25 bp)
ATACTTTGCATTTGTCCACTTAGGT
LOC_Os02g24330
Os.15301.1.S1_at--342--3071Chr02:14112972..14112996 (25 bp)
AATCTTGTTTGGCTTATGTCTCTTA
LOC_Os02g24330
Os.15301.1.S1_at--149--2691Chr02:14113035..14113059 (25 bp)
AAGCTGCGTTGTTAGCATTCTCTAC
LOC_Os02g24330
Os.15301.1.S1_at--205--6751Chr02:14113086..14113110 (25 bp)
GTTCATGTTGTTCTTCCATTGTCAT
LOC_Os02g24330
Os.15301.1.S1_at--510--1111Chr02:14113130..14113154 (25 bp)
AGTGTTTGTCTTCTTTCATGTTCCC
LOC_Os02g24330
Os.15301.1.S1_at--302--6711Chr02:14113149..14113173 (25 bp)
GTTCCCTCTATCTGCTGAACATTAT
LOC_Os02g24330
Os.15301.1.S1_at--888--10291Chr02:14113173..14113197 (25 bp)
TTTCATTGCAGGTCTGATGCTACCA
LOC_Os02g24330
Os.15301.1.S1_at--703--9751Chr02:14113218..14113242 (25 bp)
TAATCTATGCCGGTACTTGCGAACC
LOC_Os02g24330
Os.15301.1.S1_at--380--5451Chr02:14113238..14113262 (25 bp)
GAACCCAAGGATTGCAGATCTCTTC
LOC_Os02g24330
Os.15301.1.S1_at--919--2471Chr02:14113313..14113337 (25 bp)
AACACTGAGTCAATTTTGCGTCCAT
LOC_Os02g24330
Os.15301.1.S1_at--572--10711Chr02:14113328..14113352 (25 bp)
TTGCGTCCATGTTTCTTATCTTTTC
LOC_Os02g24330
Target Sequence 
ATACTTTGCATTTGTCCACTTAGGTTGAAGAATCTTGTTTGGCTTATGTCTCTTATTGAAAGAAGGAAAATGTACCATTT
TTCTAGGTTGATAAAGCTGCGTTGTTAGCATTCTCTACTATAGGGTTATTGTTGTTTTCACAAAGTTCATGTTGTTCTTC
CATTGTCATATCACTTGAATCATATTTCAGTGTTTGTCTTCTTTCATGTTCCCTCTATCTGCTGAACATTATTTCATTGC
AGGTCTGATGCTACCANAAGAGACTGCTGCAGCAAACTAATCTATGCCGGTACTTGCGAACCCAAGGATTGCAGATCTCT
TCTGCTAAATAGCCTTTCTATTATTTTTTTGCTACTTGTGTGCTACAGTTGTAACACTGAGTCAATTTTGCGTCCATGTT
TCTTATCTTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15301.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis