Browse Element(s) Details


Os.12054.1.S1_at

Description gb:AK067100.1
DB_XREF= gi:32977118
TID=Os.12054.1
CNT=32
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.12054 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013098O07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098O07, full insert sequence.
FL= gb:AK067100.1 gb:AK062153.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2435411/11diaminopimelate decarboxylase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g24300Os.45976.1.S1_x_at1/112+14094749..14095958transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g24310NANA2+14098100..14100094transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g24320NANA2+14102758..14105867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g24330Os.15301.1.S1_at11/112+14109885..14113511Plant specific eukaryotic initiation factor 4B family protein, expressed
LOC_Os02g24340OsAffx.12168.1.S1_at10/112+14115233..141180401-acyl-sn-glycerol-3-phosphate acyltransferase zeta precursor, putative
LOC_Os02g24354Os.12054.1.S1_at11/112+14118570..14126214diaminopimelate decarboxylase family protein, expressed
LOC_Os02g24370OsAffx.12169.1.S1_at11/112+14132525..14134066hypothetical protein
LOC_Os02g24370OsAffx.12169.1.S1_x_at10/112+14132525..14134066hypothetical protein
LOC_Os02g24370Os.27455.1.S1_x_at1/112+14132525..14134066hypothetical protein
LOC_Os02g24370OsAffx.11259.1.S1_at1/112+14132525..14134066hypothetical protein
LOC_Os02g24370OsAffx.19363.1.S1_at1/112+14132525..14134066hypothetical protein
LOC_Os02g24370Os.27455.1.S1_at1/112+14132525..14134066hypothetical protein
LOC_Os02g24380OsAffx.2727.1.S1_at8/112+14138340..14139351hypothetical protein
LOC_Os02g24390OsAffx.2728.1.S1_at11/112+14140046..14140988hypothetical protein
LOC_Os02g24390OsAffx.31091.1.S1_x_at1/112+14140046..14140988hypothetical protein
LOC_Os02g24400OsAffx.12170.1.S1_at11/112+14143743..14145052hypothetical protein
LOC_Os02g24400OsAffx.22442.1.S1_x_at1/112+14143743..14145052hypothetical protein
LOC_Os02g24410OsAffx.31083.3.S1_s_at11/112+14146692..14147775hypothetical protein
LOC_Os02g24420OsAffx.19776.1.S1_at1/112+14149302..14151875retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009089biological_processlysine biosynthesis via diaminopimelate
GO:0008836molecular_functiondiaminopimelate decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12054.1.S1_at--1116--411Chr02:14119278..14119302 (25 bp)
ATCTGCAGATTTCCTTGGCAAAGAC
LOC_Os02g24354
Os.12054.1.S1_at--879--1071Chr02:14119253..14119277 (25 bp)
AGGGAACTTCCAACACCTGATAAGG
LOC_Os02g24354
Os.12054.1.S1_at--162--10511Chr02:14119144..14119168 (25 bp)
TTCATGACGCAGGAGCCTACTGCAT
LOC_Os02g24354
Os.12054.1.S1_at--327--8911Chr02:14119120..14119144 (25 bp)
TGAGCATGGCTTCAACCTACAACTT
LOC_Os02g24354
Os.12054.1.S1_at--327--3631Chr02:14119098..14119122 (25 bp)
CTTGAAGTTGCGACCACCTGAATAT
LOC_Os02g24354
Os.12054.1.S1_at--1092--8611Chr02:14118935..14118959 (25 bp)
TGGGTCCATTGCTAAGATTCGGCGT
LOC_Os02g24354
Os.12054.1.S1_at--204--9551Chr02:14118882..14118906 (25 bp)
TCTTTGATAATCTCTCTGCCTAACT
LOC_Os02g24354
Os.12054.1.S1_at--1141--4291Chr02:14118864..14118888 (25 bp)
CCTAACTCGTTTTCCTGCAATTGTA
LOC_Os02g24354
Os.12054.1.S1_at--238--10611Chr02:14118801..14118825 (25 bp)
TTCGGATTGATAGCGCAGTACAGTT
LOC_Os02g24354
Os.12054.1.S1_at--122--1971Chr02:14118746..14118770 (25 bp)
ACTGTGATGTCGGTACCTTATTTTA
LOC_Os02g24354
Os.12054.1.S1_at--262--151Chr02:14118614..14118638 (25 bp)
ATTACCTGTAGGACTCTCGATGTAT
LOC_Os02g24354
Target Sequence 
ATCTGCAGATTTCCTTGGCAAAGACAGGGAACTTCCAACACCTGATAAGGGAGCTGGTTTGGTGGTTCATGACGCAGGAG
CCTACTGCATGAGCATGGCTTCAACCTACAACTTGAAGTTGCGACCACCTGAATATTGGGTAGAAGATGATGGGTCCATT
GCTAAGATTCGGCGTGGAGAGTCATTTGATGACTACATGAAGTTCTTTGATAATCTCTCTGCCTAACTCGTTTTCCTGCA
ATTGTAATAAGATTTTTCTCTTGTTATGTGTGGCTGTATCAGGATTCGGATTGATAGCGCAGTACAGTTTGCTGTAGAAT
CGGTATTTTTTTTTATTGTACTGTGATGTCGGTACCTTATTTTATCNCAAAGATTTTTGGCAAATTTTGCTACAGGACAC
TTAAATTTTGTAGCCTTTGCTGTGAGACACTAAAAAACGTATATCTTCTTGTGAACATTAAAAAATGTGGTAATTACCTG
TAGGACTCTCGATGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12054.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis