Browse Element(s) Details


Os.15402.2.S1_at

Description gb:AK068975.1
DB_XREF= gi:32978999
TID=Os.15402.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15402 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0456A01.24 (P0456A01.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013170L10, full insert sequence.
FL= gb:AK068975.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g529201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52864Os.942.1.S1_at11/111+30725792..30732331integral membrane family protein, putative, expressed
LOC_Os01g52864OsAffx.2320.1.S1_at7/111+30725792..30732331integral membrane family protein, putative, expressed
LOC_Os01g52864Os.53962.1.S1_at1/111+30725792..30732331integral membrane family protein, putative, expressed
LOC_Os01g52880OsAffx.2321.2.S1_s_at11/111+30733907..30735353Leucine Rich Repeat family protein, expressed
LOC_Os01g52890Os.37867.1.S1_at11/111+30739675..30740422expressed protein
LOC_Os01g52900Os.28903.1.S1_at11/111+30740541..30742654aminotransferase, putative, expressed
LOC_Os01g52910NANA1+30748903..30749235hypothetical protein
LOC_Os01g52920Os.15402.1.S1_at11/111+30753777..30758934expressed protein
LOC_Os01g52920Os.15402.2.S1_at1/111+30753777..30758934expressed protein
LOC_Os01g52920Os.15402.4.S1_at1/111+30753777..30758934expressed protein
LOC_Os01g52930NANA1+30760880..30764172retrotransposon protein, putative, unclassified
LOC_Os01g52940NANA1+30765251..30767695retrotransposon protein, putative, unclassified
LOC_Os01g52950NANA1+30768481..30770907retrotransposon protein, putative, unclassified
LOC_Os01g52960OsAffx.21520.1.S1_at11/111+30773205..30773854Subtilisin N-terminal Region family protein, expressed
LOC_Os01g52970Os.35947.1.S1_at11/111+30774275..30776054F-box domain containing protein, expressed
LOC_Os01g52980Os.34596.1.S1_at11/111+30780201..30782186F-box domain containing protein, expressed
LOC_Os01g52980Os.34596.2.S1_x_at11/111+30780201..30782186F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15402.2.S1_at--761--3032Chr07:25526066..25526513 (25 bp)
AATCCAGTAGCTTGTGATTACAGCA
NONE
Os.15402.2.S1_at--15--1111NONE
AGTGTGCAAGTCAGCGGTCAAGGAT
NONE
Os.15402.2.S1_at--545--5931Chr07:25528298..25528322 (25 bp)
GAGCAGCTGAACTTGAAAGCCGAGC
NONE
Os.15402.2.S1_at--151--7931Chr07:25528337..25528361 (25 bp)
GGATTTTGCCATTTCGGCAACACGA
NONE
Os.15402.2.S1_at--134--8191Chr07:25528362..25528386 (25 bp)
GGAAGACAAATCCTTTTGACTGTTC
NONE
Os.15402.2.S1_at--353--5731Chr07:25528379..25528403 (25 bp)
GACTGTTCTCTGAATGAACTGTCAC
NONE
Os.15402.2.S1_at--93--1971Chr07:25528396..25528420 (25 bp)
ACTGTCACAGTGGATAAGCCTTTCT
NONE
Os.15402.2.S1_at--301--351Chr07:25528409..25528433 (25 bp)
ATAAGCCTTTCTGTACTCAGTCGTC
NONE
Os.15402.2.S1_at--824--2431Chr07:25528443..25528467 (25 bp)
AAAAGAGCTGCAACAATCTTCTGAA
NONE
Os.15402.2.S1_at--906--10491Chr07:25528495..25528519 (25 bp)
TTAATGATGACCCAAACTCCTCTTC
NONE
Os.15402.2.S1_at--727--8771Chr07:25528524..25528548 (25 bp)
TGTTTTGTACTCTCTTTGTCCTATA
NONE
Target Sequence 
AATCCAGTAGCTTGTGATTACAGCAAGTGGTTTTCTTCCATTATTTGGTGGGTTGCTTCAAGCTCATGGGAAATACCCAG
GAGAAACTAGAGTCAGCTTCTCTTGCAAGAATAAGCAAGGCACCAAGTTCACTCCTATGTTTCAATGGCCTGATAAGTCT
CTGTCATTTGGAGTTACTCAAGCCTTAGCATGGAAAAGAGCTGGTCTCATGGTGAGGCCCAGTGTGCAAGTCAGCGGTCA
AGGATGAACTGTCATAATTGCATTGTGATGTGGATCAGGCTTAAAGCAAGGAATGTCCCAACAAACTAATTTGACATTTG
GAGCAGCTGAACTTGAAAGCCGAGCAGGGAAATTCAGATGGATTTTGCCATTTCGGCAACACGAGGAAGACAAATCCTTT
TGACTGTTCTCTGAATGAACTGTCACAGTGGATAAGCCTTTCTGTACTCAGTCGTCTGTAAATGTAAAAGAGCTGCAACA
ATCTTCTGAAACATCATTGAACCTGTGTTAATTTGATTTAATGATGACCCAAACTCCTCTTCACCTTGTTTTGTACTCTC
TTTGTCCTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15402.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis