Browse Element(s) Details


Os.15402.4.S1_at

Description gb:NM_189833.1
DB_XREF= gi:34906749
GEN=P0552F09.28
TID=Os.15402.4
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.15402 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative dihydropterin pyrophosphokinase dihydropteroate synthase (P0552F09.28), mRNA.
PROD=putative dihydropterin pyrophosphokinasedihydropteroate synthase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g529201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52864Os.942.1.S1_at11/111+30725792..30732331integral membrane family protein, putative, expressed
LOC_Os01g52864OsAffx.2320.1.S1_at7/111+30725792..30732331integral membrane family protein, putative, expressed
LOC_Os01g52864Os.53962.1.S1_at1/111+30725792..30732331integral membrane family protein, putative, expressed
LOC_Os01g52880OsAffx.2321.2.S1_s_at11/111+30733907..30735353Leucine Rich Repeat family protein, expressed
LOC_Os01g52890Os.37867.1.S1_at11/111+30739675..30740422expressed protein
LOC_Os01g52900Os.28903.1.S1_at11/111+30740541..30742654aminotransferase, putative, expressed
LOC_Os01g52910NANA1+30748903..30749235hypothetical protein
LOC_Os01g52920Os.15402.1.S1_at11/111+30753777..30758934expressed protein
LOC_Os01g52920Os.15402.2.S1_at1/111+30753777..30758934expressed protein
LOC_Os01g52920Os.15402.4.S1_at1/111+30753777..30758934expressed protein
LOC_Os01g52930NANA1+30760880..30764172retrotransposon protein, putative, unclassified
LOC_Os01g52940NANA1+30765251..30767695retrotransposon protein, putative, unclassified
LOC_Os01g52950NANA1+30768481..30770907retrotransposon protein, putative, unclassified
LOC_Os01g52960OsAffx.21520.1.S1_at11/111+30773205..30773854Subtilisin N-terminal Region family protein, expressed
LOC_Os01g52970Os.35947.1.S1_at11/111+30774275..30776054F-box domain containing protein, expressed
LOC_Os01g52980Os.34596.1.S1_at11/111+30780201..30782186F-box domain containing protein, expressed
LOC_Os01g52980Os.34596.2.S1_x_at11/111+30780201..30782186F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15402.4.S1_at--520--7511NONE
GTGGATACTGCAAAGTCCTTCATGG
NONE
Os.15402.4.S1_at--661--9911NONE
TACTGCAAAGTCCTTCATGGACCTG
NONE
Os.15402.4.S1_at--753--3731Chr07:25526481..25526505 (25 bp)
CTAACATATGTTACTGGCGACAGGA
NONE
Os.15402.4.S1_at--699--6771Chr07:25526490..25526514 (25 bp)
GTTACTGGCGACAGGATTACAGCAA
NONE
Os.15402.4.S1_at--767--1371Chr07:25527193..25527361 (25 bp)
AGAGCTGGTCTCATGCCTTGGTATC
NONE
Os.15402.4.S1_at--828--7812Chr07:25527199..25527367 (25 bp)
GGTCTCATGCCTTGGTATCATGCTA
NONE
Os.15402.4.S1_at--705--9611Chr07:25527351..25527371 (21 bp)
TCATGCCTTGGTATCATGCTAAAGG
NONE
Os.15402.4.S1_at--1117--4831Chr07:25527364..25527388 (25 bp)
GCTAAAGGCATGCATCTATTTCGGA
NONE
Os.15402.4.S1_at--508--8271Chr07:25527370..25527394 (25 bp)
GGCATGCATCTATTTCGGATGAAAC
NONE
Os.15402.4.S1_at--207--2391Chr07:25527391..25527415 (25 bp)
AAACTGTCAGAATGCAAGTGCCGGA
NONE
Os.15402.4.S1_at--748--3411Chr07:25527398..25527422 (25 bp)
CAGAATGCAAGTGCCGGATGATTAA
NONE
Target Sequence 
GTGGATACTGCAAAGTCCTTCATGGACCTGCAGTTCCCCAATGGACAACTAACATATGTTACTGGCGACAGGATTACAGC
AAGTGGTTTTCTTCCATTATTTGGTGGGTTGCTTCAAGCTCATGGGAAATACCCAGGAGAAACTAGAGTCAGCTTCTCTT
GCAAGAATAAGCAAGGCACCAAGTTCACTCCTATGTTTCAATGGCCTGATAAGTCTCTGTCATTTGGAGTTACTCAAGCC
TTAGCATGGAAAAGAGCTGGTCTCATGCCTTGGTATCATGCTAAAGGCATGCATCTATTTCGGATGAAACTGTCAGAATG
CAAGTGCCGGATGATTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15402.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis