Browse Element(s) Details


Os.15490.1.S1_at

Description gb:AK069474.1
DB_XREF= gi:32979498
TID=Os.15490.1
CNT=83
FEA=FLmRNA
TIER=FL+Stack
STK=38
UG=Os.15490 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023019E21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019E21, full insert sequence.
FL= gb:AK069474.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1617011/11PQ loop repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16140Os.31233.2.S1_at10/111+9110670..9111238expressed protein
LOC_Os01g16146OsAffx.11075.1.S1_x_at11/111+9111381..9114226phenazine biosynthesis protein PhzF family protein, expressed
LOC_Os01g16146OsAffx.11075.1.S1_at10/111+9111381..9114226phenazine biosynthesis protein PhzF family protein, expressed
LOC_Os01g16146Os.20404.1.S1_at9/111+9111381..9114226phenazine biosynthesis protein PhzF family protein, expressed
LOC_Os01g16152Os.115.1.S1_at11/111+9114957..9118213AhpC/TSA family protein, expressed
LOC_Os01g16160OsAffx.5954.5.S1_x_at4/111+9123286..9128634retrotransposon protein, putative, unclassified
LOC_Os01g16160OsAffx.5954.1.S1_x_at2/111+9123286..9128634retrotransposon protein, putative, unclassified
LOC_Os01g16160OsAffx.5954.2.S1_at1/111+9123286..9128634retrotransposon protein, putative, unclassified
LOC_Os01g16160OsAffx.5954.3.S1_x_at1/111+9123286..9128634retrotransposon protein, putative, unclassified
LOC_Os01g16170Os.15490.1.S1_at11/111+9130321..9137232PQ loop repeat family protein, expressed
LOC_Os01g16180Os.22508.1.S1_at11/111+9156567..9162489MT-A70 family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15490.1.S1_at--549--7911Chr01:9132360..9132384 (25 bp)
GGATTGGTCAAAACTTAAGCCGAAT
LOC_Os01g16170
Os.15490.1.S1_at--1067--9791Chr01:9132345..9132369 (25 bp)
TAAGCCGAATCTACCGTGGCTTGTA
LOC_Os01g16170
Os.15490.1.S1_at--1132--8011Chr01:9132314..9132338 (25 bp)
GGAGGATGTGTTTTGCTTGATACTT
LOC_Os01g16170
Os.15490.1.S1_at--918--2171Chr01:9131832..9131856 (25 bp)
ACACGTTCCTGATGAGCCTGACAGT
LOC_Os01g16170
Os.15490.1.S1_at--361--1591Chr01:9130884..9130908 (25 bp)
AGCTCCATGAATTTGTGAAACGGCA
LOC_Os01g16170
Os.15490.1.S1_at--630--5531Chr01:9130868..9130892 (25 bp)
GAAACGGCATTTTTGCGTCGGAGGC
LOC_Os01g16170
Os.15490.1.S1_at--323--6211Chr01:9130848..9130872 (25 bp)
GAGGCCGTCTTATACAGTCCGCATG
LOC_Os01g16170
Os.15490.1.S1_at--247--1151Chr01:9130833..9130857 (25 bp)
AGTCCGCATGCAGCTGTAGAGCCTA
LOC_Os01g16170
Os.15490.1.S1_at--92--9611Chr01:9130796..9130820 (25 bp)
TCATATGCGTCTTGCTCTGTGTCGT
LOC_Os01g16170
Os.15490.1.S1_at--1005--291Chr01:9130726..9130750 (25 bp)
ATAGCTTATCGCAATTGTTTGGTGG
LOC_Os01g16170
Os.15490.1.S1_at--949--6891Chr01:9130702..9130726 (25 bp)
GTATCAAAGCGTGCCAAGTATCATA
LOC_Os01g16170
Target Sequence 
GGATTGGTCAAAACTTAAGCCGAATCTACCGTGGCTTGTAGATGCTGGAGGATGTGTTTTGCTTGATACTTTTATTATTC
TTCAGTTTCTTTATTTCCATTNATNGGAAGCGACACGTTCCTGATGAGCCTGACAGTGCTGATAAAGTTTAATGGATAGC
AACTGAGAATATTATTACCTNTCTTCGACATAACAGACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTG
AAACGGCATTTTTGCGTCGGAGGCCGTCTTATACAGTCCGCATGCAGCTGTAGAGCCTACCACACGCTGTTTCATATGCG
TCTTGCTCTGTGTCGTGGCAAAGCCATCTTCAGAACAGAGTGGGTGTCATATGGAGAANCTATAGCTTATCGCAATTGTT
TGGTGGTATCAAAGCGTGCCAAGTATCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15490.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis