Browse Element(s) Details


Os.15513.1.S1_at

Description gb:AK100083.1
DB_XREF= gi:32985292
TID=Os.15513.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15513 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0089F16.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023002G01, full insert sequence.
FL= gb:AK100083.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2210011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22050Os.7699.1.S1_at10/1110+11059272..11059939expressed protein
LOC_Os10g22060OsAffx.8218.1.S1_at11/1110+11061335..11065242hypothetical protein
LOC_Os10g22070NANA10+11066947..11067693Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g22080OsAffx.8217.1.S1_x_at11/1110+11073327..11077544hypothetical protein
LOC_Os10g22080OsAffx.8217.1.S1_at11/1110+11073327..11077544hypothetical protein
LOC_Os10g22080Os.57369.1.S1_at1/1110+11073327..11077544hypothetical protein
LOC_Os10g22080Os.15513.2.S1_x_at1/1110+11073327..11077544hypothetical protein
LOC_Os10g22090OsAffx.30493.1.S1_at11/1110+11077961..11078332hypothetical protein
LOC_Os10g22100Os.15513.1.S1_at11/1110+11082931..11085694expressed protein
LOC_Os10g22100Os.15513.2.S1_x_at11/1110+11082931..11085694expressed protein
LOC_Os10g22100OsAffx.8217.1.S1_x_at6/1110+11082931..11085694expressed protein
LOC_Os10g22110OsAffx.20446.1.S1_at11/1110+11087332..11089941hypothetical protein
LOC_Os10g22130OsAffx.29724.1.S1_x_at11/1110+11096351..11101516hypothetical protein
LOC_Os10g22130OsAffx.29724.3.S1_x_at2/1110+11096351..11101516hypothetical protein
LOC_Os10g22140OsAffx.29724.2.S1_x_at11/1110+11102773..11105752hypothetical protein
LOC_Os10g22140OsAffx.29724.2.S1_at11/1110+11102773..11105752hypothetical protein
LOC_Os10g22150OsAffx.30496.1.S1_at3/1110+11108438..11108830hypothetical protein
LOC_Os10g22150OsAffx.30496.1.S1_x_at2/1110+11108438..11108830hypothetical protein
LOC_Os10g22150OsAffx.20673.1.S1_x_at1/1110+11108438..11108830hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15513.1.S1_at--36--9691Chr10:11085438..11085462 (25 bp)
TCACAACATCAGACGTGGTCGCGTC
LOC_Os10g22100
Os.15513.1.S1_at--398--1911Chr10:11085450..11085474 (25 bp)
ACGTGGTCGCGTCCTAGTTGCTAGT
LOC_Os10g22100
Os.15513.1.S1_at--537--8831Chr10:11085494..11085518 (25 bp)
TGATTAATGATGATGCTTGCGCAAC
LOC_Os10g22100
Os.15513.1.S1_at--138--8871Chr10:11085504..11085528 (25 bp)
TGATGCTTGCGCAACTGAGTAGCCC
LOC_Os10g22100
Os.15513.1.S1_at--157--5011Chr10:11085535..11085559 (25 bp)
GCAGGCAGCGACTAATTAACTTTGA
LOC_Os10g22100
Os.15513.1.S1_at--583--11Chr10:11085549..11085573 (25 bp)
ATTAACTTTGACTCTTATTTATGGT
LOC_Os10g22100
Os.15513.1.S1_at--993--8871Chr10:11085588..11085612 (25 bp)
TGATGGCAGCATTTTAAGTTTGTGT
LOC_Os10g22100
Os.15513.1.S1_at--967--8551Chr10:11085627..11085651 (25 bp)
TGGATGTGTTTTTCTAAATGTCGCA
LOC_Os10g22100
Os.15513.1.S1_at--529--2291Chr10:11085642..11085666 (25 bp)
AAATGTCGCATGCTGGCTACTCTGA
LOC_Os10g22100
Os.15513.1.S1_at--25--4991Chr10:11085649..11085673 (25 bp)
GCATGCTGGCTACTCTGAAATTTCA
LOC_Os10g22100
Os.15513.1.S1_at--1089--3831Chr10:11085663..11085687 (25 bp)
CTGAAATTTCAGCTGTTTCTATTTT
LOC_Os10g22100
Target Sequence 
TCACAACATCAGACGTGGTCGCGTCCTAGTTGCTAGTNTAATCTGTTTGTTGTTTATGATTAATGATGATGCTTGCGCAA
CTGAGTAGCCCNAATTAGCAGGCAGCGACTAATTAACTTTGACTCTTATTTATGGTCACNTGGTGTAGGTCTGATGGCAG
CATTTTAAGTTTGTGTTGATACTGAAATATTGGATGTGTTTTTCTAAATGTCGCATGCTGGCTACTCTGAAATTTCAGCT
GTTTCTATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15513.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis