Browse Element(s) Details


Os.15580.1.S1_at

Description gb:AK062353.1
DB_XREF= gi:32972371
TID=Os.15580.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15580 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-101-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-G07, full insert sequence.
FL= gb:AK062353.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4260011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42550OsAffx.25494.1.S1_at10/113+23643788..23646025hypothetical protein
LOC_Os03g42569OsAffx.25495.1.S1_at10/113+23648652..23659081expressed protein
LOC_Os03g42569OsAffx.3490.1.S1_at9/113+23648652..23659081expressed protein
LOC_Os03g42569OsAffx.4759.1.S1_at3/113+23648652..23659081expressed protein
LOC_Os03g42590OsAffx.3491.1.S1_at11/113+23659482..23660168hypothetical protein
LOC_Os03g42600Os.15580.1.S1_at11/113+23669514..23670052expressed protein
LOC_Os03g42610Os.46012.2.S1_x_at8/113+23672364..23678027retrotransposon protein, putative, unclassified
LOC_Os03g42610Os.27088.1.A1_x_at6/113+23672364..23678027retrotransposon protein, putative, unclassified
LOC_Os03g42610Os.46012.3.S1_x_at4/113+23672364..23678027retrotransposon protein, putative, unclassified
LOC_Os03g42630Os.51378.1.S1_at11/113+23688874..23690856no apical meristem, putative, expressed
LOC_Os03g42630Os.51926.1.S1_x_at1/113+23688874..23690856no apical meristem, putative, expressed
LOC_Os03g42650Os.16695.1.S1_at11/113+23693179..23700433pentatricopeptide, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15580.1.S1_at--396--2231Chr03:23669731..23669755 (25 bp)
ACAAGGCTTCAAGCACGGCGGTGAC
LOC_Os03g42600
Os.15580.1.S1_at--748--4171Chr03:23669823..23669847 (25 bp)
CCCAGCTAGAGGTTTCGTCGACGAA
LOC_Os03g42600
Os.15580.1.S1_at--778--6831Chr03:23669834..23669858 (25 bp)
GTTTCGTCGACGAACGCACGGCGGC
LOC_Os03g42600
Os.15580.1.S1_at--782--3331Chr03:23669850..23669874 (25 bp)
CACGGCGGCGAAGAGTATATATGTC
LOC_Os03g42600
Os.15580.1.S1_at--385--6891Chr03:23669864..23669888 (25 bp)
GTATATATGTCTGTTCGTCGTGCTG
LOC_Os03g42600
Os.15580.1.S1_at--1058--7191Chr03:23669880..23669904 (25 bp)
GTCGTGCTGCCTGAGTACCTGATGA
LOC_Os03g42600
Os.15580.1.S1_at--614--4471Chr03:23669888..23669912 (25 bp)
GCCTGAGTACCTGATGATCACTGTA
LOC_Os03g42600
Os.15580.1.S1_at--28--331Chr03:23669914..23669938 (25 bp)
ATACGGCTTGTCGATCTGATGATAT
LOC_Os03g42600
Os.15580.1.S1_at--341--10552Chr03:23669953..23669977 (25 bp)
TTCATTTCTTTTCGATTCCTCTTTC
LOC_Os03g42600
Os.15580.1.S1_at--572--9551Chr03:23669972..23669996 (25 bp)
TCTTTCGATCCGTTCTGCAGATGTC
LOC_Os03g42600
Os.15580.1.S1_at--730--6271Chr03:23669991..23670015 (25 bp)
GATGTCAAGCCTGTGTACGTAAGTT
LOC_Os03g42600
Target Sequence 
ACAAGGCTTCAAGCACGGCGGTGACGGCGTCGTGCCGCGCCGGCGCGGCCATGCCGGAGGCCACCGTCTGCCTGCTCCTC
GACCGCTTCGCCCCCAGCTAGAGGTTTCGTCGACGAACGCACGGCGGCGAAGAGTATATATGTCTGTTCGTCGTGCTGCC
TGAGTACCTGATGATCACTGTAAATACGGCTTGTCGATCTGATGATATTCAGATCTTGCNNTTTCATTTCTTTTCGATTC
CTCTTTCGATCCGTTCTGCAGATGTCAAGCCTGTGTACGTAAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15580.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis