Browse Element(s) Details


Os.15593.1.S1_at

Description gb:AK121215.1
DB_XREF= gi:37990838
TID=Os.15593.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15593 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023089O12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023089O12, full insert sequence.
FL= gb:AK121215.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1574011/11calcium-binding EF hand family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15690Os.50849.1.S1_at11/113+8635497..8639055Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os03g15690Os.38261.1.S1_x_at9/113+8635497..8639055Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os03g15690Os.38261.1.S1_at9/113+8635497..8639055Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os03g15700Os.5848.2.S1_x_at11/113+8639284..8642074Splicing factor 3A subunit 2, putative, expressed
LOC_Os03g15700Os.5848.1.S1_at7/113+8639284..8642074Splicing factor 3A subunit 2, putative, expressed
LOC_Os03g15710Os.33475.1.S1_at11/113+8643321..8645199Strictosidine synthase family protein, expressed
LOC_Os03g15720Os.11444.1.S1_at11/113+8647119..8650177expressed protein
LOC_Os03g15730Os.11649.1.S1_at11/113+8652651..8655595S-ribonuclease binding protein SBP1, putative, expressed
LOC_Os03g15740Os.15593.1.S1_at11/113+8658231..8661389calcium-binding EF hand family protein, putative, expressed
LOC_Os03g15750Os.33208.1.S1_at11/113+8662824..8666613Longevity-assurance protein containing protein, expressed
LOC_Os03g15760NANA3+8667439..8671132hypothetical protein
LOC_Os03g15770Os.45938.1.S1_at11/113+8677906..8680663Protein kinase domain containing protein, expressed
LOC_Os03g15780Os.7114.1.S1_s_at11/113+8681841..8686829anthranilate synthase component I family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006493biological_processprotein amino acid O-linked glycosylation
GO:0005509molecular_functioncalcium ion binding
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15593.1.S1_at--512--7611Chr03:8660811..8660835 (25 bp)
GGGAAGGTTCCATCAGCATTCAAGT
LOC_Os03g15740
Os.15593.1.S1_at--141--9811Chr03:8660864..8660888 (25 bp)
TAACGAGTCTGAGGCTCTTATCGAT
LOC_Os03g15740
Os.15593.1.S1_at--195--451Chr03:8660947..8660971 (25 bp)
ATCTTTGGTGTCGATTGCTCGAGCA
LOC_Os03g15740
Os.15593.1.S1_at--139--5931Chr03:8660967..8660991 (25 bp)
GAGCATGAATCTGTGTATCCCCTTT
LOC_Os03g15740
Os.15593.1.S1_at--451--2811Chr03:8661001..8661025 (25 bp)
AAGATCTCTAGATAGTCTCCTGCCC
LOC_Os03g15740
Os.15593.1.S1_at--962--9491Chr03:8661016..8661040 (25 bp)
TCTCCTGCCCTCTTGTAAACTAAGG
LOC_Os03g15740
Os.15593.1.S1_at--857--9771Chr03:8661036..8661060 (25 bp)
TAAGGTGCTGTTCTGTTCGGAGTTT
LOC_Os03g15740
Os.15593.1.S1_at--673--3951Chr03:8661053..8661077 (25 bp)
CGGAGTTTTCTGAATGTGTTCCAAC
LOC_Os03g15740
Os.15593.1.S1_at--931--3131Chr03:8661096..8661120 (25 bp)
AATTAGCTATTGTTCGTCCAAGTGT
LOC_Os03g15740
Os.15593.1.S1_at--136--3091Chr03:8661183..8661207 (25 bp)
AATAGAGATCCTTGCTGATATCCAT
LOC_Os03g15740
Os.15593.1.S1_at--786--9771Chr03:8661361..8661385 (25 bp)
TAAGGCAGTCATCATGCTGGCCACT
LOC_Os03g15740
Target Sequence 
GGGAAGGTTCCATCAGCATTCAAGTTGGATGAGTACAGGTTCAAAGAATATGGTAACGAGTCTGAGGCTCTTATCGATAA
GTGCATGTGCTTTAATTTACATTCTAAGAAGCTCGAAGCTGATACTTGATCATTCGATCTTTGGTGTCGATTGCTCGAGC
ATGAATCTGTGTATCCCCTTTNTAGGTGCAAAGATCTCTAGATAGTCTCCTGCCCTCTTGTAAACTAAGGTGCTGTTCTG
TTCGGAGTTTTCTGAATGTGTTCCAACTACTTGAAAATCCTAATCAATTAGCTATTGTTCGTCCAAGTGTATGGGAGTGA
GAACATGTGAATTCCNAACACACTGTTGTTACNATCCCCNATGCTCTTGTTTAATAGAGATCCTTGCTGATATCCATGAG
NTTTTATTTGAACCAAACAATTTTGGGCTATTTTTTTCTTTAATCACACTTGTATGATTTATAGCTTGGGTTGCAGGAAT
AGATGGTAAAATCACTATGTACATTCAGTTTTAAACTTCTTTGTAAGTTGGTCTAACAAAGATTATTTTCTAAGGCAGTC
ATCATGCTGGCCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15593.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis