Browse Element(s) Details


Os.15715.1.S1_at

Description gb:AI978519
DB_XREF= gi:5803549
DB_XREF=RZ886.R
CLONE=RZ886
TID=Os.15715.1
CNT=8
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.15715 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative far-red impaired response protein (OJ1457_D07.22), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3142011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31380Os.15042.2.S1_x_at11/117+18585704..18594429NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os07g31380Os.15042.1.S1_a_at11/117+18585704..18594429NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os07g31380Os.15042.1.S2_at10/117+18585704..18594429NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os07g31390OsAffx.22303.1.S1_at11/117+18596522..18597805Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os07g31400Os.43995.1.S1_at10/117+18598084..18601712transposon protein, putative, unclassified, expressed
LOC_Os07g31410OsAffx.28696.1.S1_x_at11/117+18604453..18605088expressed protein
LOC_Os07g31420Os.15715.1.S1_at11/117+18608658..18612756transposon protein, putative, unclassified, expressed
LOC_Os07g31430Os.37746.1.S1_at9/117+18616597..18617943phosphate-responsive 1 family protein, putative, expressed
LOC_Os07g31440Os.10927.1.S1_x_at11/117+18619688..18623049expressed protein
LOC_Os07g31440Os.10927.2.S1_at10/117+18619688..18623049expressed protein
LOC_Os07g31450Os.10905.1.S1_x_at11/117+18624091..18637639SNF2 family N-terminal domain containing protein, expressed
LOC_Os07g31450OsAffx.10855.1.S1_at2/117+18624091..18637639SNF2 family N-terminal domain containing protein, expressed
LOC_Os07g31450Os.10905.2.S1_at1/117+18624091..18637639SNF2 family N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15715.1.S1_at--714--5551Chr07:18611956..18611979 (24 bp)
GAAAGCATAACTGACGCCACAAATC
LOC_Os07g31420
Os.15715.1.S1_at--1154--51Chr07:18612092..18612116 (25 bp)
ATTGACATCTACTGGTGCACACGAA
LOC_Os07g31420
Os.15715.1.S1_at--485--5551Chr07:18612114..18612257 (25 bp)
GAAACCTTCCCTTATGGAGTGGAGA
LOC_Os07g31420
Os.15715.1.S1_at--1021--3051Chr07:18612279..18612303 (25 bp)
AATACAACAGTGCACCTAGCTTCCA
LOC_Os07g31420
Os.15715.1.S1_at--1006--4911Chr07:18612297..18612321 (25 bp)
GCTTCCACTGGCCTGAAAGCAGTAG
LOC_Os07g31420
Os.15715.1.S1_at--714--811Chr07:18612359..18612383 (25 bp)
ATGGTCCATGCGTTGAGAATATTCT
LOC_Os07g31420
Os.15715.1.S1_at--677--8551Chr07:18612437..18612461 (25 bp)
TGGAGGGTTCCTGAATCCTGACCAT
LOC_Os07g31420
Os.15715.1.S1_at--279--111Chr07:18612525..18612549 (25 bp)
ATTCGGTCTATATTGGTTGTCCCCT
LOC_Os07g31420
Os.15715.1.S1_at--809--7011Chr07:18612580..18612604 (25 bp)
GTACATAATCATTTCCCCTTTTTCT
LOC_Os07g31420
Os.15715.1.S1_at--745--3031Chr07:18612650..18612674 (25 bp)
AATCCTGATCATTCACGTGGTCACG
LOC_Os07g31420
Os.15715.1.S1_at--729--731Chr07:18612694..18612718 (25 bp)
ATGTTACTCCTGTAAACCCCATAGT
LOC_Os07g31420
Target Sequence 
GAAAGCATAACTGACGCCACAAATCATAATCAAGTTAATGAGGGATGGCCATTGACATCTACTGGTGCACACGAAACCTT
CCCTTATGGAGTGGAGACTATTTCATTCGATTTGTCTCAATACAACAGTGCACCTAGCTTCCACTGGCCTGAAAGCAGTA
GCAGGTNTCAGCTTCAGTGAGATGAGGTGAAAAATGCAATGGTCCATGCGTTGAGAATATTCTAAGTTTGACAGACTTGC
AAGATGGGCAAAGTTATTAATTACCNTGTTTCATGCTGGAGGGTTCCTGAATCCTGACCATNTGAGGAATGTGAGAAAAG
GCTCAACCTGGCGAAAACCAGTAATAACAACCGGCTTTTAACGGATTCGGTCTATATTGGTTGTCCCCTGATATTTTAGA
TATATGTAATGGCTGAGATGTACATAATCATTTCCCCTTTTTCTCATCCTCAGATAAATTGTAGCTTCCNCTAGGTAATG
TGTAATGTTAATCCTGATCATTCACGTGGTCACGTCTTAAATAATTAGACTGAATGTTACTCCTGTAAACCCCATAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15715.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis