Browse Element(s) Details


Os.15738.1.S1_at

Description gb:AB066561.1
DB_XREF= gi:29466965
GEN=ossap2
TID=Os.15738.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15738 (NCBI UniGene Cluster)
DEF=Oryza sativa ossap2 gene for secretory acid phosphatase precursor, complete cds.
PROD=secretory acid phosphatase precursor
FL= gb:AK066273.1 gb:AB066561.1 gb:AK058368.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4402011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43960OsAffx.7884.1.S1_at11/1112+27251828..27252368hypothetical protein
LOC_Os12g43970Os.54768.1.S1_at10/1112+27252953..27255061hydrolase, alpha/beta fold family protein, expressed
LOC_Os12g43980Os.43567.1.S1_x_at8/1112+27255789..27258283transposon protein, putative, unclassified, expressed
LOC_Os12g43980Os.38172.1.S1_x_at4/1112+27255789..27258283transposon protein, putative, unclassified, expressed
LOC_Os12g43990Os.57165.1.S1_at11/1112+27260197..27261033expressed protein
LOC_Os12g44000Os.12316.1.S1_at10/1112+27261833..27265116Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os12g44010OsAffx.20111.1.S1_at11/1112+27267698..27269080expressed protein
LOC_Os12g44020Os.15738.1.S1_at11/1112+27270290..27273545expressed protein
LOC_Os12g44020OsAffx.9512.1.S1_x_at3/1112+27270290..27273545expressed protein
LOC_Os12g44030OsAffx.9512.1.S1_x_at1/1112+27276298..27277590expressed protein
LOC_Os12g44040Os.27105.1.S1_at11/1112+27279627..27282727transposase protein, putative, expressed
LOC_Os12g44040Os.27105.1.S2_s_at11/1112+27279627..27282727transposase protein, putative, expressed
LOC_Os12g44040Os.9552.1.S1_s_at11/1112+27279627..27282727transposase protein, putative, expressed
LOC_Os12g44050Os.53424.1.S1_at10/1112+27282857..27283690expressed protein
LOC_Os12g44060Os.9556.1.S1_at11/1112+27291162..27293894nodulin family protein, putative, expressed
LOC_Os12g44060Os.9556.1.S2_at11/1112+27291162..27293894nodulin family protein, putative, expressed
LOC_Os12g44070Os.56205.1.S1_at11/1112+27296483..27298336nodulin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016036biological_processcellular response to phosphate starvation
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15738.1.S1_at--541--4411Chr12:27270812..27270836 (25 bp)
GCCACGCCACGCTGGAGATCAAGAA
LOC_Os12g44020
Os.15738.1.S1_at--913--10351Chr12:27270675..27270699 (25 bp)
TTATTAATCGACTCCAACCATCTCA
LOC_Os12g44020
Os.15738.1.S1_at--938--2391Chr12:27270651..27270675 (25 bp)
AAACTTCTTAATTTGTATCACTGCT
LOC_Os12g44020
Os.15738.1.S1_at--910--6891Chr12:27270637..27270661 (25 bp)
GTATCACTGCTATGCTATTGCCATT
LOC_Os12g44020
Os.15738.1.S1_at--496--10132Chr08:2088630..2088924 (25 bp)
TATGCTATTGCCATTCTTCTTCTTC
NONE
Os.15738.1.S1_at--254--7951Chr12:27270593..27270617 (25 bp)
GGATAATAAATACTCCTACTATGCA
LOC_Os12g44020
Os.15738.1.S1_at--507--3091Chr12:27270562..27270586 (25 bp)
AATACTACTAGCAGAGTCTATCTTG
LOC_Os12g44020
Os.15738.1.S1_at--883--6091Chr12:27270549..27270573 (25 bp)
GAGTCTATCTTGTTAAGCCGTGAGA
LOC_Os12g44020
Os.15738.1.S1_at--347--1671Chr12:27270534..27270558 (25 bp)
AGCCGTGAGATAATTAATCCCCAAA
LOC_Os12g44020
Os.15738.1.S1_at--1154--2971Chr12:27270511..27270535 (25 bp)
AATGGGACACTTGCCAACACATTTG
LOC_Os12g44020
Os.15738.1.S1_at--786--1251Chr12:27270357..27270381 (25 bp)
AGATTGCATCTAAAGTTCTCAAGGA
LOC_Os12g44020
Target Sequence 
GCCACGCCACGCTGGAGATCAAGAACCGGACGCACGCGCACTACGCGTGGCACCGCAACCACGACGGCGCCAAGGCCGTC
GCCGACGCCGTCTGGCTCACCAACCGCTACTGGATGCCCACCAACGACGATGTATAATTATTAATCGACTCCAACCATCT
CAAACTTCTTAATTTGTATCACTGCTATGCTATTGCCATTCTTCTTCTTCTTTAGCTTTGGATAATAAATACTCCTACTA
TGCAATAACAAATACTACTAGCAGAGTCTATCTTGTTAAGCCGTGAGATAATTAATCCCCAAATGGGACACTTGCCAACA
CATTTGGCTACCAAATTGGATATAATTAAAAATGTTTATATTTTGGAGCAAAGAGAGTAGTACAATCTAAAAGGGAGTCA
CAAAAGGATTGGTTTCTTTGGAATATTTTTCATGTGGCTTTGTTTGTAACAAAAGAGATTGCATCTAAAGTTCTCAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15738.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis