Browse Element(s) Details


Os.1577.1.S1_at

Description gb:AK066220.1
DB_XREF= gi:32976238
TID=Os.1577.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.1577 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0456F08.3 (P0456F08.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013050L21, full insert sequence.
FL= gb:AK066220.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5125011/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51200Os.11642.1.S1_at11/111+29758507..29763300Casein kinase I, epsilon isoform, putative, expressed
LOC_Os01g51210Os.12736.1.S1_x_at11/111+29764143..29766710lysine decarboxylase, putative, expressed
LOC_Os01g51220Os.1575.1.S1_at11/111+29769499..29773949Transport protein particle subunit trs31, putative, expressed
LOC_Os01g51230Os.1576.1.S1_at10/111+29774875..29777301IQ calmodulin-binding motif family protein, expressed
LOC_Os01g51240OsAffx.11557.1.S1_at11/111+29781501..29782308hypothetical protein
LOC_Os01g51250Os.1577.1.S1_at11/111+29785491..29789880Mitochondrial carrier protein, expressed
LOC_Os01g51250Os.1577.2.S1_x_at10/111+29785491..29789880Mitochondrial carrier protein, expressed
LOC_Os01g51260Os.38391.2.S1_at11/111+29796437..29798347Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g51270NANA1+29802387..29802680hypothetical protein
LOC_Os01g51280Os.46757.1.S1_s_at11/111+29805955..29809697Survival protein SurE containing protein, expressed
LOC_Os01g51290Os.25899.1.S1_a_at11/111+29810069..29819366Protein kinase domain containing protein, expressed
LOC_Os01g51290Os.25899.2.S1_s_at11/111+29810069..29819366Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005215molecular_functiontransporter activity
GO:0005488molecular_functionbinding
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1577.1.S1_at--715--1071Chr01:29789473..29789497 (25 bp)
AGGGCAAGGTTCTCTTTCAAGATTT
LOC_Os01g51250
Os.1577.1.S1_at--1118--10151Chr01:29789498..29789522 (25 bp)
TATCAAGTGCCTTTTGTGAAGTCAC
LOC_Os01g51250
Os.1577.1.S1_at--818--7091Chr01:29789518..29789542 (25 bp)
GTCACAATTGTATAAAGCCTCTGAG
LOC_Os01g51250
Os.1577.1.S1_at--982--1671Chr01:29789533..29789557 (25 bp)
AGCCTCTGAGGTTCAATCTTGTCAA
LOC_Os01g51250
Os.1577.1.S1_at--1040--1531Chr01:29789580..29789604 (25 bp)
AGCTTACATATTCTTCCGATTCATT
LOC_Os01g51250
Os.1577.1.S1_at--117--10211Chr01:29789604..29789628 (25 bp)
TATTTTCATTCATTACATCCACCAG
LOC_Os01g51250
Os.1577.1.S1_at--1135--1051Chr01:29789651..29789675 (25 bp)
AGGGTGCTACCACAACTTTTAGGAT
LOC_Os01g51250
Os.1577.1.S1_at--797--10291Chr01:29789707..29789731 (25 bp)
TTTCCCATAAATCTTGACCTACTCC
LOC_Os01g51250
Os.1577.1.S1_at--433--1991Chr01:29789727..29789751 (25 bp)
ACTCCTCCAGAGCTGTTTATTGCTA
LOC_Os01g51250
Os.1577.1.S1_at--372--4951Chr01:29789764..29789788 (25 bp)
GCATAGGGTTTTAGTTCTTCCTCGC
LOC_Os01g51250
Os.1577.1.S1_at--57--10451Chr01:29789774..29789798 (25 bp)
TTAGTTCTTCCTCGCCAAGGATTTG
LOC_Os01g51250
Target Sequence 
AGGGCAAGGTTCTCTTTCAAGATTTTATCAAGTGCCTTTTGTGAAGTCACAATTGTATAAAGCCTCTGAGGTTCAATCTT
GTCAAGTAGTAATTGTGTTAACTAACAAGCTTACATATTCTTCCGATTCATTATTTTCATTCATTACATCCACCAGATGT
GGAACGTTGTAAATTTGTAGGGTGCTACCACAACTTTTAGGATGCTACAAAAGGTTTCAAAATTCCATACGGGTTTTCCC
ATAAATCTTGACCTACTCCTCCAGAGCTGTTTATTGCTATTGTTATTTTATGCATAGGGTTTTAGTTCTTCCTCGCCAAG
GATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1577.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis