Browse Element(s) Details


Os.15797.1.S1_at

Description gb:AK067124.1
DB_XREF= gi:32977142
TID=Os.15797.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15797 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013098L04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098L04, full insert sequence.
FL= gb:AK067124.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0699011/11protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06970Os.4844.1.S1_at11/115+3623889..3626088Peroxidase family protein, expressed
LOC_Os05g06980Os.27328.1.S1_at11/115+3630683..3641564expressed protein
LOC_Os05g06990Os.15797.1.S1_at11/115+3649022..3651769protein kinase, putative, expressed
LOC_Os05g07000Os.50563.1.S1_at11/115+3652046..3656263RNA recognition motif family protein, expressed
LOC_Os05g07000Os.3748.1.S1_at1/115+3652046..3656263RNA recognition motif family protein, expressed
LOC_Os05g07010OsAffx.4266.1.S1_at11/115+3657667..3659300myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os05g07020OsAffx.14577.1.S1_at10/115+3659900..3663746hypothetical protein
LOC_Os05g07020Os.53408.1.A1_at1/115+3659900..3663746hypothetical protein
LOC_Os05g07030Os.6153.1.S1_at11/115+3667973..3675645arginyl-tRNA synthetase family protein, expressed
LOC_Os05g07040Os.51192.1.A1_a_at11/115+3675928..3680375PHD finger protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15797.1.S1_at--347--1231Chr05:3649051..3649075 (25 bp)
AGTTCTAGCTCTTGTTGGGATCATC
LOC_Os05g06990
Os.15797.1.S1_at--583--5451Chr05:3651311..3651335 (25 bp)
GAACGGCCTACGATGGGAGATGTCC
LOC_Os05g06990
Os.15797.1.S1_at--92--4271Chr05:3651334..3651358 (25 bp)
CCTGTGGAACCTGGAGTTTGTGCTC
LOC_Os05g06990
Os.15797.1.S1_at--257--411Chr05:3651405..3651429 (25 bp)
ATCAGATCTCTGAACTCCCTTCAAA
LOC_Os05g06990
Os.15797.1.S1_at--176--2291Chr05:3651427..3651451 (25 bp)
AAATGCCCAGAGGATAAGCTCCCTG
LOC_Os05g06990
Os.15797.1.S1_at--839--2691Chr05:3651442..3651466 (25 bp)
AAGCTCCCTGGAGATCAGCACTGCA
LOC_Os05g06990
Os.15797.1.S1_at--35--5471Chr05:3651477..3651501 (25 bp)
GAACGGCCATGGACTACTCTCAGAT
LOC_Os05g06990
Os.15797.1.S1_at--875--6271Chr05:3651499..3651523 (25 bp)
GATGTCAACCAGTAATGCCTTCTCA
LOC_Os05g06990
Os.15797.1.S1_at--563--7071Chr05:3651510..3651534 (25 bp)
GTAATGCCTTCTCACAGCTGATCAA
LOC_Os05g06990
Os.15797.1.S1_at--519--4831Chr05:3651629..3651653 (25 bp)
GCTCAGTTGATTGTCTACACTCTTG
LOC_Os05g06990
Os.15797.1.S1_at--947--9011Chr05:3651691..3651715 (25 bp)
TGCATTGAATTTTTGTTACCCCTAT
LOC_Os05g06990
Target Sequence 
AGTTCTAGCTCTTGTTGGGATCATCGACAAGAGGATCGCCGGGACAATCAGGCCAGAATCGCTGAGGAAGTACGGGGAGA
CGGTGGAGAAATGCCTCGCGGAGTACGGCGTCGAACGGCCTACGATGGGAGATGTCCTGTGGAACCTGGAGTTTGTGCTC
CAGCTGCAGGAGGCAGGCCCGGACATGTCCAACATTGATAGCATGAATCAGATCTCTGAACTCCCTTCAAATGCCCAGAG
GATAAGCTCCCTGGAGATCAGCACTGCAGATGAAAGCCGAACGGCCATGGACTACTCTCAGATGTCAACCAGTAATGCCT
TCTCACAGCTGATCAACACAGAAGGGAGGTGAATTTGGAGTGAAATTGTCCTAAGAGTCACTGCAAAAAAATGTTGAACA
TGTTCAGTTAGGGAAAATGAGATGTTTCTTGCTCAGTTGATTGTCTACACTCTTGTTTGATTTTGCCCAGATATATATAA
CAAGCCTTCAATTGCATTGAATTTTTGTTACCCCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15797.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis