Browse Element(s) Details


Os.15799.1.S1_at

Description gb:AY129294.1
DB_XREF= gi:22658439
TID=Os.15799.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15799 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) beta-glucosidase mRNA, complete cds.
PROD=beta-glucosidase
FL= gb:AK119546.1 gb:AY129294.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1142011/11Glycosyl hydrolase family 1 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11360Os.16437.1.S1_at11/113+5831689..5836578Leucine Rich Repeat family protein, expressed
LOC_Os03g11370Os.7036.1.S1_at11/113+5837342..5839072B3 DNA binding domain containing protein, expressed
LOC_Os03g11380OsAffx.25055.1.S1_s_at11/113+5839832..5843006SNARE domain containing protein, expressed
LOC_Os03g11380OsAffx.25055.1.S1_at11/113+5839832..5843006SNARE domain containing protein, expressed
LOC_Os03g11380Os.51936.1.S1_at11/113+5839832..5843006SNARE domain containing protein, expressed
LOC_Os03g11390OsAffx.25056.1.S1_at10/113+5843172..5843815hypothetical protein
LOC_Os03g11400OsAffx.3200.1.S1_s_at11/113+5844753..5848379Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g11400Os.51997.1.S1_at11/113+5844753..5848379Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g11400OsAffx.3200.1.S1_at11/113+5844753..5848379Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g11410Os.10891.1.S1_at2/113+5849271..5853928Mitochondrial processing peptidase beta subunit, mitochondrial precursor, putative, expressed
LOC_Os03g11420Os.15799.1.S1_at11/113+5855359..5862419Glycosyl hydrolase family 1 protein, expressed
LOC_Os03g11430OsAffx.12826.1.S1_at11/113+5870390..5872403hypothetical protein
LOC_Os03g11440Os.28148.1.S1_at11/113+5875150..5878645Protein transport protein Sec61 alpha subunit isoform 2, putative, expressed
LOC_Os03g11450OsAffx.25057.1.S1_at11/113+5879212..5881407hypothetical protein
LOC_Os03g11460Os.5352.1.S1_at10/113+5886818..5896168expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15799.1.S1_at--1048--2591Chr03:5856101..5856125 (25 bp)
AACCCGTTCATTTCCATCAAGGACG
LOC_Os03g11420
Os.15799.1.S1_at--273--6471Chr03:5855807..5855831 (25 bp)
GATACTCCTCGAGATTCGGGCTCTA
LOC_Os03g11420
Os.15799.1.S1_at--1068--7571Chr03:5855790..5855814 (25 bp)
GGGCTCTACTTCGTGGACTACAAGG
LOC_Os03g11420
Os.15799.1.S1_at--93--2551Chr03:5855742..5855766 (25 bp)
AACTCGGTGCAGTGGTTCAAGGCCC
LOC_Os03g11420
Os.15799.1.S1_at--1021--5351Chr03:5855713..5855737 (25 bp)
GAAGACCTGAACTCCAGCTGAGAAG
LOC_Os03g11420
Os.15799.1.S1_at--845--9071Chr03:5855685..5855709 (25 bp)
TGCTACAATAGTTTGGGCGCCATTT
LOC_Os03g11420
Os.15799.1.S1_at--185--4171Chr03:5855668..5855692 (25 bp)
CGCCATTTCCATACATCCGATAGAT
LOC_Os03g11420
Os.15799.1.S1_at--1109--311Chr03:5855619..5855643 (25 bp)
ATACGATACCCTGCATATCTCGGAA
LOC_Os03g11420
Os.15799.1.S1_at--352--9011Chr03:5855547..5855571 (25 bp)
TGAATCGTCTGGTCTGTTAGCACAC
LOC_Os03g11420
Os.15799.1.S1_at--384--151Chr03:5855441..5855465 (25 bp)
ATTAGCTCCAATCCTATCCATCTAT
LOC_Os03g11420
Os.15799.1.S1_at--601--3551Chr03:5855423..5855447 (25 bp)
CATCTATCTCTATTCAACGGCTGTG
LOC_Os03g11420
Target Sequence 
AACCCGTTCATTTCCATCAAGGACGCCCTCAAGGACAGCAAGAGGATCAAATACCACAATGACTACCTCACCAATCTGGC
TGCTTCCATCAAGGAGGACGGGTGCGACGTACGTGGGTACTTCGCGTGGTCTCTGCTGGACAACTGGGAGTGGGCGGCCG
GATACTCCTCGAGATTCGGGCTCTACTTCGTGGACTACAAGGATAACCTCAAGAGATACCCCAAGAACTCGGTGCAGTGG
TTCAAGGCCCTCCTGAAGACCTGAACTCCAGCTGAGAAGTAGTGCTACAATAGTTTGGGCGCCATTTCCATACATCCGAT
AGATTTATTGGTCTGCACATATACGAATATACGATACCCTGCATATCTCGGAAATGTTTTGTGGTTTTTGTTTTGTTTGT
GATACGATAGAATGTATCACTGAATCGTCTGGTCTGTTAGCACACGAGTGAAAAGGGGTAGTACTGCACTCTGCNCCTTG
TCAGCTTCAAATTGGAAGTCCGGATTCGGCTAATGCAGAGGNTGGCATTAGCTCCAATCCTATCCATCTATCTCTATTCA
ACGGCTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15799.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis