Browse Element(s) Details


Os.15800.1.S1_x_at

Description gb:AK070023.1
DB_XREF= gi:32980047
TID=Os.15800.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15800 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023039K01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023039K01, full insert sequence.
FL= gb:AK070023.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2541011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25380Os.50892.1.S1_at11/119+15211405..15214466kinesin motor protein, putative, expressed
LOC_Os09g25390Os.50273.1.S1_at11/119+15221651..15225443Phospholipase D. Active site motif family protein, expressed
LOC_Os09g25400NANA9+15229072..15229649hypothetical protein
LOC_Os09g25410Os.15800.1.S1_x_at11/119+15232454..15234332expressed protein
LOC_Os09g25420OsAffx.30015.1.S1_at11/119+15234571..15236823Zinc finger, C2H2 type family protein, expressed
LOC_Os09g25430Os.9450.1.S1_at11/119+15239462..15241481Zinc finger, C2H2 type family protein, expressed
LOC_Os09g25440OsAffx.17889.1.S1_at10/119+15244152..15246476Zinc finger, C2H2 type family protein, expressed
LOC_Os09g25450OsAffx.30016.1.S1_at11/119+15248651..15249123hypothetical protein
LOC_Os09g25460Os.37941.1.S1_at11/119+15250888..15255324Transferase family protein, expressed
LOC_Os09g25460OsAffx.23984.1.S1_x_at1/119+15250888..15255324Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15800.1.S1_x_at--21--7611Chr09:15233781..15233805 (25 bp)
GGGCACCATAACCATTTGGAACTTA
LOC_Os09g25410
Os.15800.1.S1_x_at--1022--4891Chr09:15233865..15233889 (25 bp)
GCTTGTAGGGATACCGGAAACTCTC
LOC_Os09g25410
Os.15800.1.S1_x_at--172--5551Chr09:15233881..15233905 (25 bp)
GAAACTCTCCGGCAAGCGATGATAA
LOC_Os09g25410
Os.15800.1.S1_x_at--846--10311Chr09:15233914..15233938 (25 bp)
TTTCATGGCAAGACCGTGTAGCGTT
LOC_Os09g25410
Os.15800.1.S1_x_at--349--7811Chr09:15233942..15233966 (25 bp)
GGTCTAGTCCTTCCATAGATGTGGC
LOC_Os09g25410
Os.15800.1.S1_x_at--152--591Chr09:15234066..15234090 (25 bp)
ATGCCTTAATGCAAGCTCGATCTGA
LOC_Os09g25410
Os.15800.1.S1_x_at--1091--6531Chr09:15234119..15234143 (25 bp)
GATTTTGAACTGACGCACATTGACT
LOC_Os09g25410
Os.15800.1.S1_x_at--1021--211Chr09:15234146..15234170 (25 bp)
ATTTGTCTGGATTGTGTTCTGCTGC
LOC_Os09g25410
Os.15800.1.S1_x_at--187--6731Chr09:15234161..15234185 (25 bp)
GTTCTGCTGCATCCTTTGGAAACAT
LOC_Os09g25410
Os.15800.1.S1_x_at--685--6851Chr09:15234207..15234231 (25 bp)
GTTTGTTGTTACCATTTACTTCTGA
LOC_Os09g25410
Os.15800.1.S1_x_at--42--1391Chr09:15234247..15234271 (25 bp)
AGACTGGCATCCTGGCATTTTGACA
LOC_Os09g25410
Target Sequence 
GGGCACCATAACCATTTGGAACTTAAAAAGGCTGAACAGGCTGGAGTAGATGAAGNTATTATGACNGCCGATGTCAACCT
ATCAGCTTGTAGGGATACCGGAAACTCTCCGGCAAGCGATGATAAGAGGAGTGTTTCATGGCAAGACCGTGTAGCGTTGA
AGGTCTAGTCCTTCCATAGATGTGGCTATGAAATAACATCCTTCTCAGATGATTNACTGCACTCTGCTTATTTTTTTCTG
AAATATTTTGCAGTGCTTTGTATATCACAAGAGTCTTAGTTAGACATGCCTTAATGCAAGCTCGATCTGATGATGTGATG
TTATGAAATATCCACCCAGATTTTGAACTGACGCACATTGACTGCATTTGTCTGGATTGTGTTCTGCTGCATCCTTTGGA
AACATGGTGACAAATCAATGTTTTTTGTTTGTTGTTACCATTTACTTCTGAAATGGCAACTGCAGCAGACTGGCATCCTG
GCATTTTGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15800.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis