Browse Element(s) Details


Os.15803.1.S1_at

Description gb:AK102091.1
DB_XREF= gi:32987300
TID=Os.15803.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.15803 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033082P22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033082P22, full insert sequence.
FL= gb:AK102091.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4995011/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49910OsAffx.32072.3.S1_at11/112+30489558..30491473hypothetical protein
LOC_Os02g49910OsAffx.32072.2.S1_x_at3/112+30489558..30491473hypothetical protein
LOC_Os02g49910OsAffx.32072.1.S1_x_at3/112+30489558..30491473hypothetical protein
LOC_Os02g49910OsAffx.32072.2.S1_at1/112+30489558..30491473hypothetical protein
LOC_Os02g49920OsAffx.12570.1.S1_at11/112+30494471..30495928very-long-chain fatty acid condensing enzyme, putative
LOC_Os02g49930OsAffx.30013.3.S1_x_at11/112+30501227..30502383hypothetical protein
LOC_Os02g49930OsAffx.30013.3.S1_at11/112+30501227..30502383hypothetical protein
LOC_Os02g49930OsAffx.30013.1.S1_x_at7/112+30501227..30502383hypothetical protein
LOC_Os02g49930OsAffx.30013.5.S1_x_at1/112+30501227..30502383hypothetical protein
LOC_Os02g49940NANA2+30507691..30508428transposon protein, putative, unclassified
LOC_Os02g49950Os.15803.1.S1_at11/112+30512193..30516546U-box domain containing protein, expressed
LOC_Os02g49960NANA2+30518796..30519533expressed protein
LOC_Os02g49970Os.54883.1.S1_at8/112+30522776..30525251ZIM motif family protein, expressed
LOC_Os02g49980Os.9111.1.S1_at10/112+30527553..30530507small GTP-binding protein domain containing protein, expressed
LOC_Os02g49986Os.7051.1.S1_at11/112+30533910..30535244ODORANT1 protein, putative, expressed
LOC_Os02g49992Os.16116.1.S1_at11/112+30536300..30547698expressed protein
LOC_Os02g49992Os.16116.1.S2_at11/112+30536300..30547698expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15803.1.S1_at--211--431Chr02:30516001..30516025 (25 bp)
ATCTTGTCAGTTCTTGTGAGCCACC
LOC_Os02g49950
Os.15803.1.S1_at--897--8311Chr02:30516051..30516075 (25 bp)
GGCTCATGCTATACCCTTTTTGATA
LOC_Os02g49950
Os.15803.1.S1_at--295--6651Chr02:30516081..30516105 (25 bp)
GTTGAGGTCAAGTCAGGCCCGTAAC
LOC_Os02g49950
Os.15803.1.S1_at--939--971Chr02:30516107..30516131 (25 bp)
AGGAGAATGCTGCAGCCATCTTGCT
LOC_Os02g49950
Os.15803.1.S1_at--944--991Chr02:30516146..30516170 (25 bp)
AGGATGCTGAGAACCTCGCTTGTAT
LOC_Os02g49950
Os.15803.1.S1_at--1014--6131Chr02:30516174..30516198 (25 bp)
GAGGTTGGGTGCTCAAATACCACTA
LOC_Os02g49950
Os.15803.1.S1_at--84--9991Chr02:30516191..30516215 (25 bp)
TACCACTAACTGAGCTGTCCAAGAC
LOC_Os02g49950
Os.15803.1.S1_at--689--9491Chr02:30516247..30516271 (25 bp)
TCTCTCCTGGAGCATCTCAGTAAGT
LOC_Os02g49950
Os.15803.1.S1_at--763--1191Chr02:30516269..30516293 (25 bp)
AGTTGCAGGTGCTCTAATTCCACTG
LOC_Os02g49950
Os.15803.1.S1_at--546--311Chr02:30516302..30516326 (25 bp)
ATACCATTTTGCGTGTGTGCGTGTT
LOC_Os02g49950
Os.15803.1.S1_at--348--2691Chr02:30516350..30516374 (25 bp)
AAGCTGTAACCTCATCTCTTATAGA
LOC_Os02g49950
Target Sequence 
ATCTTGTCAGTTCTTGTGAGCCACCATGAGTGTAAAATTGCCATAGCGAAGGCTCATGCTATACCCTTTTTGATAGACTT
GTTGAGGTCAAGTCAGGCCCGTAACAAGGAGAATGCTGCAGCCATCTTGCTTGCCCTTTGCAAGAAGGATGCTGAGAACC
TCGCTTGTATAGGGAGGTTGGGTGCTCAAATACCACTAACTGAGCTGTCCAAGACCGGCACAGACAGAGCCAAGCGCAAG
GCAACCTCTCTCCTGGAGCATCTCAGTAAGTTGCAGGTGCTCTAATTCCACTGTCCATCGCATACCATTTTGCGTGTGTG
CGTGTTCTACATGTACGTATACATACGAAAAGCTGTAACCTCATCTCTTATAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15803.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis