Browse Element(s) Details


Os.15852.1.S1_at

Description gb:NM_194659.1
DB_XREF= gi:37530677
TID=Os.15852.1
CNT=11
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.15852 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative anthocyanidin-3-glucoside rhamnosyltransferase (OSJNBa0049K09.17), mRNA.
PROD=putative anthocyanidin-3-glucosiderhamnosyltransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g033207/11UDP-rhamnose:rhamnosyltransferase, putative, expressed
LOC_Os06g112701/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03260OsAffx.30252.1.S1_at11/1110+1365838..1366663hypothetical protein
LOC_Os10g03260OsAffx.30252.1.S1_x_at11/1110+1365838..1366663hypothetical protein
LOC_Os10g03260OsAffx.30257.1.S1_x_at1/1110+1365838..1366663hypothetical protein
LOC_Os10g03270OsAffx.30253.1.S1_x_at11/1110+1368468..1369723hypothetical protein
LOC_Os10g03270OsAffx.30253.1.S1_at11/1110+1368468..1369723hypothetical protein
LOC_Os10g03270Os.55138.1.S1_x_at3/1110+1368468..1369723hypothetical protein
LOC_Os10g03280NANA10+1372953..1373334hypothetical protein
LOC_Os10g03290Os.53180.1.S1_at2/1110+1374961..1375977hypothetical protein
LOC_Os10g03290Os.51919.1.S1_at1/1110+1374961..1375977hypothetical protein
LOC_Os10g03300NANA10+1380080..1383629retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g03310Os.46610.1.A1_x_at1/1110+1385440..1387772retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03320Os.15852.1.S1_at7/1110+1389876..1391363UDP-rhamnose:rhamnosyltransferase, putative, expressed
LOC_Os10g03330OsAffx.10637.1.S1_s_at11/1110+1391901..1395587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03330OsAffx.10637.3.S1_s_at11/1110+1391901..1395587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03330OsAffx.10637.4.S1_s_at9/1110+1391901..1395587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03330OsAffx.10637.2.S1_at1/1110+1391901..1395587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03340OsAffx.32056.1.S1_at11/1110+1397173..1400517transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03340OsAffx.32056.1.S1_x_at10/1110+1397173..1400517transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03350NANA10+1406992..1407921retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03360Os.46736.1.S1_at1/1110+1415290..1416555Transferase family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15852.1.S1_at--114--6872Chr10:1391024..1391048 (25 bp)
GTTTGGGAACCCTCTCATCATGTTG
LOC_Os10g03320
Os.15852.1.S1_at--600--731Chr10:1391043..1391067 (25 bp)
ATGTTGCCCATCTTCACGGACCAAG
LOC_Os10g03320
Os.15852.1.S1_at--1052--7011Chr10:1391264..1391288 (25 bp)
GTACATCGACGACTTTATACAGCAG
LOC_Os10g03320
Os.15852.1.S1_at--1071--10172Chr10:1417572..1417596 (25 bp)
TATACAGCAGCTTGTTTCTCACGTC
NONE
Os.15852.1.S1_at--239--9692Chr10:1391297..1391321 (25 bp)
TCACGTCGCGGATAGCAGCTGCAAT
LOC_Os10g03320
Os.15852.1.S1_at--552--9011Chr10:1391316..1391340 (25 bp)
TGCAATATTGCCACACCAGTTCCTT
LOC_Os10g03320
Os.15852.1.S1_at--904--1232Chr10:1391333..1391357 (25 bp)
AGTTCCTTCCAGTTCTAGCTGAGAT
LOC_Os10g03320
Os.15852.1.S1_at--640--6051NONE
GAGATTATTTCTCTGTTGCTGTAAT
NONE
Os.15852.1.S1_at--667--111Chr10:1401158..1401182 (25 bp)
ATTCTTGTCGTAATGGCTACGCGCA
NONE
Os.15852.1.S1_at--295--9951Chr10:1401175..1401199 (25 bp)
TACGCGCACCTCATGTTGATGTAAA
NONE
Os.15852.1.S1_at--693--9811Chr10:1401209..1401233 (25 bp)
TAACACTACCCTTTACATCACTCTA
NONE
Target Sequence 
GTTTGGGAACCCTCTCATCATGTTGCCCATCTTCACGGACCAAGGNCCGAACGCGCGGCTCATGGAGGGTAACAAGGTAG
GGTTGCAGGTGAGGCGGGATGACACGGACGGGTCGTTCGACCGCCATGGCGTCGCAGCCGCGGTCCGGGCCGTCATGGTG
GAGGAAGAAACCAGGAGGGTGTTCGTAGCAANCGCCCTCAGGATGCAAAAGATTGTCACTGACAAGGAACTCCATGAGAG
GTACATCGACGACTTTATACAGCAGCTTGTTTCTCACGTCGCGGATAGCAGCTGCAATATTGCCACACCAGTTCCTTCCA
GTTCTAGCTGAGATTATTTCTCTGTTGCTGTAATTCTTGTCGTAATGGCTACGCGCACCTCATGTTGATGTAAAGAATGT
GGGTAACACTACCCTTTACATCACTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15852.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis