Browse Element(s) Details


Os.15944.1.S1_a_at

Description gb:AK071551.1
DB_XREF= gi:32981574
TID=Os.15944.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15944 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative leaf protein (OSJNBa0078O01.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023106C12, full insert sequence.
FL= gb:AK071551.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3573011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35670Os.16128.2.S1_at11/1110+18749054..18751998RNA-binding protein, putative, expressed
LOC_Os10g35680Os.46826.1.S1_x_at11/1110+18752888..18753633acetyltransferase, GNAT family protein, expressed
LOC_Os10g35680Os.46826.1.S1_at11/1110+18752888..18753633acetyltransferase, GNAT family protein, expressed
LOC_Os10g35680Os.46826.2.S1_at1/1110+18752888..18753633acetyltransferase, GNAT family protein, expressed
LOC_Os10g35690Os.5981.1.S1_at11/1110+18754688..18758049ribosomal protein S18 containing protein, expressed
LOC_Os10g35710Os.10526.1.S1_a_at11/1110+18763069..18766056expressed protein
LOC_Os10g35720Os.11576.1.S1_a_at11/1110+18767214..18770999glutaredoxin-related protein, expressed
LOC_Os10g35730Os.15944.1.S1_a_at11/1110+18774478..18776095expressed protein
LOC_Os10g35730Os.15944.2.S1_x_at11/1110+18774478..18776095expressed protein
LOC_Os10g35730Os.25231.1.S1_x_at4/1110+18774478..18776095expressed protein
LOC_Os10g35740OsAffx.6879.1.S1_at11/1110+18778654..18778955hypothetical protein
LOC_Os10g35750Os.25231.1.S1_x_at11/1110+18779352..18781429pentatricopeptide, putative, expressed
LOC_Os10g35750Os.25231.1.S1_at11/1110+18779352..18781429pentatricopeptide, putative, expressed
LOC_Os10g35750Os.15944.2.S1_x_at2/1110+18779352..18781429pentatricopeptide, putative, expressed
LOC_Os10g35760Os.46648.1.S1_at11/1110+18782630..18784562pentatricopeptide, putative, expressed
LOC_Os10g35760Os.15944.2.S1_x_at1/1110+18782630..18784562pentatricopeptide, putative, expressed
LOC_Os10g35770Os.7675.1.S1_at11/1110+18800270..18803895expressed protein
LOC_Os10g35770Os.21300.2.S1_x_at1/1110+18800270..18803895expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15944.1.S1_a_at--12--991Chr10:18775578..18775602 (25 bp)
AGGATGCCTTTTGCCAATACTTGTT
LOC_Os10g35730
Os.15944.1.S1_a_at--579--6351Chr10:18775580..18775604 (25 bp)
GATGCCTTTTGCCAATACTTGTTAT
LOC_Os10g35730
Os.15944.1.S1_a_at--687--9191Chr10:18775582..18775606 (25 bp)
TGCCTTTTGCCAATACTTGTTATAA
LOC_Os10g35730
Os.15944.1.S1_a_at--595--5051Chr10:18775758..18775782 (25 bp)
GCAGCTGAGGAGATGATGAGCTTAT
LOC_Os10g35730
Os.15944.1.S1_a_at--715--8051Chr10:18775766..18775790 (25 bp)
GGAGATGATGAGCTTATTACAGAGA
LOC_Os10g35730
Os.15944.1.S1_a_at--557--1971Chr10:18775970..18775994 (25 bp)
ACTGACCAATTCCTTTTCTTTGCTT
LOC_Os10g35730
Os.15944.1.S1_a_at--1061--3851Chr10:18775971..18775995 (25 bp)
CTGACCAATTCCTTTTCTTTGCTTA
LOC_Os10g35730
Os.15944.1.S1_a_at--829--5851Chr10:18775973..18775997 (25 bp)
GACCAATTCCTTTTCTTTGCTTATT
LOC_Os10g35730
Os.15944.1.S1_a_at--629--10291Chr10:18776016..18776040 (25 bp)
TTTCTGGGGCAATGAAGTTCAAACC
LOC_Os10g35730
Os.15944.1.S1_a_at--701--6431Chr10:18776066..18776090 (25 bp)
GATAATAAACCACTATACAACTGCT
LOC_Os10g35730
Os.15944.1.S1_a_at--209--9831Chr10:18776071..18776095 (25 bp)
TAAACCACTATACAACTGCTTATAT
LOC_Os10g35730
Target Sequence 
AGGATGCCTTTTGCCAATACTTGTTATAAGTTGGCTGGTGGATATTTCAAGGTTGGTCAGGTGTCGAAGGCAGCAGATCT
CACAAAGAAGGCACTTGCTTCTGCGAGTAATGAATGGATACCTGACCTGACGAATGTGCTGATGAGCCTGAACTATTTCG
CGGAGCAAAAGAATGTCGAAGCAGCTGAGGAGATGATGAGCTTATTACAGAGATTGGTTACTCCAACAAGGGACATTTAC
CATGGGTTACTGAAGACATATGTCAATGCAGGAAAACCAGTGTCAGACTTGCNTTCNTCGTATGAAAAAAGATGGTATGG
AGGCTGATGAGGAGACAGAGAAAATCCTTGCNNGGGAGAAGTCCACNTAGGTACACNAGGATTGAATAAAACATATCACT
GACCAATTCCTTTTCTTTGCTTATTTTGCTGTCCTTTTTCTTGTTTCTGGGGCAATGAAGTTCAAACCCNCTAGCCCGTG
GATTTGAGTATTTGATAATAAACCACTATACAACTGCTTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15944.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis