Browse Element(s) Details


Os.16014.1.S1_at

Description gb:CB669008
DB_XREF= gi:29672733
DB_XREF=OSJNEe01C23.r
CLONE=OSJNEe01C23
TID=Os.16014.1
CNT=31
FEA=FLmRNA
TIER=Stack
STK=7
UG=Os.16014 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023002I18, full insert sequence
FL= gb:AK120723.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4786011/11INDETERMINATE-related protein 9, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47830OsAffx.14319.1.S1_at11/114+28160569..28167750SNF2 domain-containing protein, putative
LOC_Os04g47830Os.24587.1.A1_at2/114+28160569..28167750SNF2 domain-containing protein, putative
LOC_Os04g47840Os.51260.1.S1_at11/114+28174658..28175198expressed protein
LOC_Os04g47860Os.16014.1.S1_at11/114+28189632..28196914INDETERMINATE-related protein 9, putative, expressed
LOC_Os04g47860Os.52565.1.S1_at11/114+28189632..28196914INDETERMINATE-related protein 9, putative, expressed
LOC_Os04g47870Os.10753.1.S2_a_at11/114+28207427..28216883PINHEAD protein, putative, expressed
LOC_Os04g47870Os.10753.1.S1_a_at11/114+28207427..28216883PINHEAD protein, putative, expressed
LOC_Os04g47870Os.23140.1.S1_at1/114+28207427..28216883PINHEAD protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16014.1.S1_at--1118--7531Chr04:28196098..28196122 (25 bp)
GTGGCGGCATCGTCCATGGCATGTC
LOC_Os04g47860
Os.16014.1.S1_at--716--5051Chr04:28196149..28196173 (25 bp)
GCAGCAGCGACATGAGCTCCTTGGA
LOC_Os04g47860
Os.16014.1.S1_at--919--9291Chr04:28196187..28196211 (25 bp)
TCCGCATCGTCCTTCAACGGGAGAA
LOC_Os04g47860
Os.16014.1.S1_at--503--5311Chr04:28196209..28196233 (25 bp)
GAAGGATGCCATGAATCCACCATGA
LOC_Os04g47860
Os.16014.1.S1_at--106--2851Chr04:28196236..28196260 (25 bp)
AAGTCATCGATCGAGCTTACACAAG
LOC_Os04g47860
Os.16014.1.S1_at--131--2671Chr04:28196258..28196282 (25 bp)
AAGCCGTCAAGCTCCGATCGATCGG
LOC_Os04g47860
Os.16014.1.S1_at--910--511Chr04:28196433..28196457 (25 bp)
ATCGATCGCATGAGCTGGTGTGCAA
LOC_Os04g47860
Os.16014.1.S1_at--998--4811Chr04:28196489..28196513 (25 bp)
GCTCTTCAAGCATATCATGACCTGG
LOC_Os04g47860
Os.16014.1.S1_at--504--6191Chr04:28196539..28196563 (25 bp)
GAGGCGTCCTCTCTGACTAATTAAG
LOC_Os04g47860
Os.16014.1.S1_at--906--1091Chr04:28196581..28196605 (25 bp)
AGTGGACGCGTGTGATGACCCTTGT
LOC_Os04g47860
Os.16014.1.S1_at--558--7671Chr04:28196617..28196641 (25 bp)
GGGTTGGTGTTAATGCCGTTGCTAT
LOC_Os04g47860
Target Sequence 
GTGGCGGCATCGTCCATGGCATGTCGACGCCGAGAGGAGACCACCACCAGAGCAGCAGCGACATGAGCTCCTTGGAGGCC
GAGATGAAGTCCGCATCGTCCTTCAACGGGAGAAGGATGCCATGAATCCACCATGATCAAGTCATCGATCGAGCTTACAC
AAGCCGTCAAGCTCCGATCGATCGGTAGTAGTACCAAGTGAGAGTCTGAGACTTGAAGCAATGCAACTGCAACTCTGGGG
GATTAACGCATGCGCGCATGAATTGGGGAGGAGCAAGCTAAGGTTATAGTATACTCATCATATATAGCCTAATGTCGAGT
TAGCAACTAAGTTTGATCGATCGCATGAGCTGGTGTGCAAGCATGCATGGGATAAAAGCTATACTAAGCTAGCTCTTCAA
GCATATCATGACCTGGAAAACTTGGGGTTTAGTCAGGAAGAGAGGCGTCCTCTCTGACTAATTAAGTAATTAAGGCTAGT
GCGAGTGGACGCGTGTGATGACCCTTGTTGCTCTCGGTGGGGTTGGTGTTAATGCCGTTGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16014.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis