Browse Element(s) Details


Os.16055.1.S1_at

Description gb:AK101820.1
DB_XREF= gi:32987029
TID=Os.16055.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.16055 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033067E18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033067E18, full insert sequence.
FL= gb:AK101820.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5187011/11FHA domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51820NANA3+29667635..29672446pentatricopeptide, putative
LOC_Os03g51830Os.7080.1.S1_at10/113+29674844..29680460DnaJ domain containing protein, expressed
LOC_Os03g51840OsAffx.25681.1.S1_at11/113+29680905..29682710pentatricopeptide, putative
LOC_Os03g51840OsAffx.26085.1.S1_x_at1/113+29680905..29682710pentatricopeptide, putative
LOC_Os03g51850Os.40855.5.S1_x_at10/113+29686219..29688991hypothetical protein
LOC_Os03g51850Os.40360.1.S1_at9/113+29686219..29688991hypothetical protein
LOC_Os03g51850Os.40360.1.S1_x_at6/113+29686219..29688991hypothetical protein
LOC_Os03g51870Os.16055.1.S1_at11/113+29692492..29695814FHA domain containing protein, expressed
LOC_Os03g51880Os.54926.1.S1_at11/113+29696280..29698422expressed protein
LOC_Os03g51890Os.22825.1.A1_at11/113+29699422..29706412hypothetical protein
LOC_Os03g51890OsAffx.25682.1.S1_at8/113+29699422..29706412hypothetical protein
LOC_Os03g51890OsAffx.11524.1.S1_at2/113+29699422..29706412hypothetical protein
LOC_Os03g51890OsAffx.11074.1.S1_s_at1/113+29699422..29706412hypothetical protein
LOC_Os03g51900Os.14204.1.S1_at11/113+29716693..29724741DEAD/DEAH box helicase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16055.1.S1_at--1047--10531Chr03:29693813..29693837 (25 bp)
TTCTGGGAGCAGCAGCTTGGAAACC
LOC_Os03g51870
Os.16055.1.S1_at--1050--5271Chr03:29693867..29693891 (25 bp)
GAATGTGTACCTCCCTAGGATGATC
LOC_Os03g51870
Os.16055.1.S1_at--976--8991Chr03:29693903..29693927 (25 bp)
TGAAGAGGCGCTTTCAGCCCTGCGG
LOC_Os03g51870
Os.16055.1.S1_at--612--9111Chr03:29695498..29695522 (25 bp)
TGCTGAAGCGCCACAAAGAGCCATT
LOC_Os03g51870
Os.16055.1.S1_at--1043--451Chr03:29695544..29695568 (25 bp)
ATCTCATTATCGATTCCAGTTCCAC
LOC_Os03g51870
Os.16055.1.S1_at--1105--6951Chr03:29695602..29695626 (25 bp)
GTAGCACTCTTCATGTTTACTCTAG
LOC_Os03g51870
Os.16055.1.S1_at--1037--931Chr03:29695661..29695685 (25 bp)
AGGACCTGGGTTCGTAGGCCTCTAT
LOC_Os03g51870
Os.16055.1.S1_at--997--2931Chr03:29695689..29695713 (25 bp)
AAGGCATTCAACATGCATCGCAGAT
LOC_Os03g51870
Os.16055.1.S1_at--518--7031Chr03:29695722..29695746 (25 bp)
GTAAATTGCCTCTCTAAGGTGATGT
LOC_Os03g51870
Os.16055.1.S1_at--115--6291Chr03:29695742..29695766 (25 bp)
GATGTTTATTCATGCCTAACCTCTA
LOC_Os03g51870
Os.16055.1.S1_at--920--2611Chr03:29695759..29695783 (25 bp)
AACCTCTATCTGGAATACAACGCGA
LOC_Os03g51870
Target Sequence 
TTCTGGGAGCAGCAGCTTGGAAACCATGACACTGAGGGAGTGGTTTCAGAGGATGAATGTGTACCTCCCTAGGATGATCA
ATGAGGCTGCTGAAGAGGCGCTTTCAGCCCTGCGGGAGAGGCATCGGCGTATAGATGAGTACATTTCAACGCTTGAGGAT
TAGCGTGATTCATGGATAATTAGGAGCTATTTGGTCAATCTGACGTAGGGGTGATGCCTGGAGATAACATTAATTGGAGG
CAATGCTTTGCTGAAGCGCCACNAAGATTTGCTGAAGCGCCACAAAGAGCCATTAGGTGATATTTCACTGGGATCATCTC
ATTATCGATTCCAGTTCCACCAAATGCCGCAAAAATCATTGATGCAATACACTGTAGCACTCTTCATGTTTACTCTAGTT
ATGTAGTACCAGTACTCTAGTACTCATGAAGTAGGACCTGGGTTCGTAGGCCTCTATGCAAAGGCATTCAACATGCATCG
CAGATTTCATTCTGTAAATTGCCTCTCTAAGGTGATGTTTATTCATGCCTAACCTCTATCTGGAATACAACGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16055.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis