Browse Element(s) Details


Os.16072.1.S1_at

Description gb:AK063364.1
DB_XREF= gi:32973382
TID=Os.16072.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16072 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-114-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-D07, full insert sequence.
FL= gb:AK063364.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g475702/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47530Os.13897.1.S1_at10/117+28421949..28433622AAA-type ATPase family protein, putative, expressed
LOC_Os07g47530Os.13897.2.S1_at10/117+28421949..28433622AAA-type ATPase family protein, putative, expressed
LOC_Os07g47540OsAffx.16752.1.S1_at10/117+28434405..28435753expressed protein
LOC_Os07g47550NANA7+28438338..28439762UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os07g47560NANA7+28442174..28442449hypothetical protein
LOC_Os07g47570Os.16072.1.S1_at2/117+28444286..28446432expressed protein
LOC_Os07g47580Os.10094.1.S1_at11/117+28446864..28449510TGF beta-inducible nuclear protein 1, putative, expressed
LOC_Os07g47590Os.26799.1.A1_at11/117+28451029..28454858heavy metal-induced putative protein 1, putative, expressed
LOC_Os07g47610OsAffx.29789.3.S1_x_at11/117+28460982..28466135hAT family dimerisation domain containing protein
LOC_Os07g47610OsAffx.29789.1.S1_x_at7/117+28460982..28466135hAT family dimerisation domain containing protein
LOC_Os07g47610OsAffx.31885.2.S1_x_at2/117+28460982..28466135hAT family dimerisation domain containing protein
LOC_Os07g47620Os.53572.1.S1_at11/117+28466708..28467888universal stress protein, putative, expressed
LOC_Os07g47620Os.8188.1.S1_s_at11/117+28466708..28467888universal stress protein, putative, expressed
LOC_Os07g47630Os.7106.1.S1_a_at11/117+28468085..28472460Pre-mRNA splicing factor SF2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16072.1.S1_at--756--6952Chr07:28446374..28446398 (25 bp)
GTAGACACCATGTATCATTCTTCAA
LOC_Os07g47570
Os.16072.1.S1_at--358--3591Chr07:28446389..28446413 (25 bp)
CATTCTTCAAGTCATATAGCCAGGA
LOC_Os07g47570
Os.16072.1.S1_at--830--6851Chr07:28446422..28446446 (25 bp)
GTTTGCTTAGCAAATTTGCCTCTTG
NONE
Os.16072.1.S1_at--84--212Chr07:28446435..28446459 (25 bp)
ATTTGCCTCTTGACGGCATTTGCAT
NONE
Os.16072.1.S1_at--381--212Chr07:28446452..28446476 (25 bp)
ATTTGCATCCTCTGTGATGTTTAGG
NONE
Os.16072.1.S1_at--544--2731Chr07:28446521..28446545 (25 bp)
AAGCAACTTATATGGGCCGCACGCA
NONE
Os.16072.1.S1_at--415--9231Chr07:28446559..28446583 (25 bp)
TCCAGACCTTCACGCGGGCCAGAAT
NONE
Os.16072.1.S1_at--188--9931Chr07:28446612..28446636 (25 bp)
TACGGAGGCCGGAGTCCAAGTTCAT
NONE
Os.16072.1.S1_at--1103--4371Chr07:28446627..28446651 (25 bp)
CCAAGTTCATGCCTCGTCGGCTAAA
NONE
Os.16072.1.S1_at--440--9391Chr07:28446640..28446664 (25 bp)
TCGTCGGCTAAACCTGTTTCTGGTT
NONE
Os.16072.1.S1_at--663--6591Chr07:28446662..28446686 (25 bp)
GTTTTGTAGTTTCCGCACCGAGTAG
NONE
Target Sequence 
GTAGACACCATGTATCATTCTTCAAGTCATATAGCCAGGAAAGCAATGGTTTGCTTAGCAAATTTGCCTCTTGACGGCAT
TTGCATCCTCTGTGATGTTTAGGTGTTTATTTGATTTTCTGGAGGATGCTTATTTTGAGAGAGAACGAAGCAACTTATAT
GGGCCGCACGCAGGCCGCAATCCCGTCCAGACCTTCACGCGGGCCAGAATCCCGTTCCGGACAACCTGTTTTGGGCCGTA
CGGAGGCCGGAGTCCAAGTTCATGCCTCGTCGGCTAAACCTGTTTCTGGTTTTGTAGTTTCCGCACCGAGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16072.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis