Browse Element(s) Details


Os.16281.1.A1_s_at

Description gb:CR282750
DB_XREF= gi:44669316
DB_XREF=CR282750
CLONE=y733e03p3
TID=Os.16281.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.16281 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g673003/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67260OsAffx.23952.1.S1_at11/111+39367480..39368971hypothetical protein
LOC_Os01g67270OsAffx.23953.1.S1_at8/111+39373991..39374761expressed protein
LOC_Os01g67280OsAffx.11769.1.S1_s_at11/111+39376689..39378379hypothetical protein
LOC_Os01g67280OsAffx.11769.2.S1_at11/111+39376689..39378379hypothetical protein
LOC_Os01g67290Os.10859.1.S1_a_at11/111+39379134..39385378cyclin, putative, expressed
LOC_Os01g67300OsAffx.23954.1.S1_at11/111+39390294..39392106expressed protein
LOC_Os01g67300Os.16281.1.A1_s_at3/111+39390294..39392106expressed protein
LOC_Os01g67310Os.15943.1.S1_at11/111+39393026..39395480Patatin-like phospholipase family protein, expressed
LOC_Os01g67314Os.36852.1.S1_at11/111+39396981..39399517expressed protein
LOC_Os01g67320OsAffx.11770.1.S1_at9/111+39405405..39408990expressed protein
LOC_Os01g67330Os.39420.1.S1_at11/111+39411930..39417878nucleotide-sugar transporter family protein, putative, expressed
LOC_Os01g67330Os.39420.2.S1_at11/111+39411930..39417878nucleotide-sugar transporter family protein, putative, expressed
LOC_Os01g67330Os.39420.2.S1_x_at10/111+39411930..39417878nucleotide-sugar transporter family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16281.1.A1_s_at--917--3811Chr01:39391636..39391660 (25 bp)
CTCCAATGTCATACTTAAGCTCAAG
LOC_Os01g67300
Os.16281.1.A1_s_at--379--3191Chr01:39392016..39392040 (25 bp)
CAATCATGTTCTTTCTGACTTGGAA
LOC_Os01g67300
Os.16281.1.A1_s_at--254--10751Chr01:39392064..39392088 (25 bp)
TTGCAATTTAGACTTGAAGCTCAAG
LOC_Os01g67300
Os.16281.1.A1_s_at--313--852Chr01:39392096..39392120 (25 bp)
ATGGAACATAATTTCCTGAGGTCTC
NONE
Os.16281.1.A1_s_at--175--7671Chr01:39392144..39392168 (25 bp)
GGGATCATGTTCAACTCTTAGTACA
NONE
Os.16281.1.A1_s_at--44--6651Chr01:39392200..39392224 (25 bp)
GTTGTATCTGTTCTCTTAACCAATC
NONE
Os.16281.1.A1_s_at--8--9571Chr01:39392213..39392237 (25 bp)
TCTTAACCAATCCAACTATTCTGGG
NONE
Os.16281.1.A1_s_at--6--8831Chr01:39392261..39392285 (25 bp)
TGTTGTGTTGCTAGTTTTCCTTCTT
NONE
Os.16281.1.A1_s_at--993--7431Chr01:39392289..39392313 (25 bp)
GTGTAATGCTATCTCTGTAGACTGT
NONE
Os.16281.1.A1_s_at--135--6951Chr01:39392305..39392329 (25 bp)
GTAGACTGTAGTTATTCCCATTCAC
NONE
Os.16281.1.A1_s_at--1002--6931Chr01:39392312..39392336 (25 bp)
GTAGTTATTCCCATTCACATTTTCT
NONE
Target Sequence 
CTCCAATGTCATACTTAAGCTCAAGACTAGGTGAACNNNANNNCCAATCATGTTCTTTCTGACTTGGAATTCGAACATGA
AACATTTGCTAATTGCAATTTAGACTTGAAGCTCAAGGAAGAATATGGAACATAATTTCCTGAGGTCTCATACTTTTGTA
GTACNGTGTACTGGGATCATGTTCAACTCTTAGTACATCTAGTTGTATTGCAATTTTTTTTTTNTTTTTGTTGTATCTGT
TCTCTTAACCAATCCAACTATTCTGGGCGGCCNAATTGACTCAGATATTTTGTTGTGTTGCTAGTTTTCCTTCTTGTAGT
GTAATGCTATCTCTGTAGACTGTAGTTATTCCCATTCACATTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16281.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis