Browse Element(s) Details


Os.16297.1.S1_a_at

Description gb:AK073709.1
DB_XREF= gi:32983732
TID=Os.16297.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.16297 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative zinc finger protein (OSJNBb0027B08.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033058P14, full insert sequence.
FL= gb:AK073709.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6157011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61510Os.38864.1.S1_at8/113+34830157..34830983pectinesterase inhibitor domain containing protein, expressed
LOC_Os03g61530Os.5700.1.S1_at9/113+34834281..34835059pectinesterase inhibitor domain containing protein, expressed
LOC_Os03g61540Os.16897.1.S1_at11/113+34835273..34839862Lipase family protein, expressed
LOC_Os03g61550OsAffx.3666.1.S1_at11/113+34843798..34845023DnaJ domain containing protein, expressed
LOC_Os03g61550Os.54537.1.S1_at1/113+34843798..34845023DnaJ domain containing protein, expressed
LOC_Os03g61560Os.7256.1.S1_at11/113+34845557..34850961expressed protein
LOC_Os03g61570Os.16297.1.S1_a_at11/113+34852338..34853780expressed protein
LOC_Os03g61580Os.26697.2.S1_x_at11/113+34857548..34861623expressed protein
LOC_Os03g61580Os.26697.1.S1_at10/113+34857548..34861623expressed protein
LOC_Os03g61580OsAffx.30311.1.S1_at1/113+34857548..34861623expressed protein
LOC_Os03g61590Os.34488.1.S1_at11/113+34862228..34862751expressed protein
LOC_Os03g61600Os.13812.1.S1_a_at11/113+34862852..34865607Phosphoribosylformylglycinamidine cyclo-ligase,chloroplast/mitochondrial precursor, putative, expressed
LOC_Os03g61610OsAffx.22651.2.S1_x_at10/113+34866275..34867556hypothetical protein
LOC_Os03g61610OsAffx.22651.2.S1_at9/113+34866275..34867556hypothetical protein
LOC_Os03g61610Os.51329.1.S1_at9/113+34866275..34867556hypothetical protein
LOC_Os03g61620Os.23649.1.S1_a_at11/113+34871286..34876282expressed protein
LOC_Os03g61630Os.10216.1.S1_at11/113+34878200..34880299SEC13-related protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010255biological_processglucose mediated signaling
GO:0051171biological_processregulation of nitrogen metabolism
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16297.1.S1_a_at--849--3711Chr03:34853388..34853412 (25 bp)
CTACCCACCTAGCAACAGCAAGAGA
LOC_Os03g61570
Os.16297.1.S1_a_at--1140--5071Chr03:34853434..34853458 (25 bp)
GCAGCCATGGGAAAGAGTGATTTGC
LOC_Os03g61570
Os.16297.1.S1_a_at--535--6111Chr03:34853448..34853472 (25 bp)
GAGTGATTTGCTTGCTTAACATGCA
LOC_Os03g61570
Os.16297.1.S1_a_at--408--10491Chr03:34853463..34853487 (25 bp)
TTAACATGCATGATCTCAACCGGGA
LOC_Os03g61570
Os.16297.1.S1_a_at--1123--9691Chr03:34853478..34853502 (25 bp)
TCAACCGGGAGAGACTAGACAGATC
LOC_Os03g61570
Os.16297.1.S1_a_at--144--9311Chr03:34853522..34853546 (25 bp)
TCCCCTGCTTAGTTTTTCCAGCTAA
LOC_Os03g61570
Os.16297.1.S1_a_at--223--6811Chr03:34853533..34853557 (25 bp)
GTTTTTCCAGCTAATTAGTTCGATC
LOC_Os03g61570
Os.16297.1.S1_a_at--952--6771Chr03:34853614..34853638 (25 bp)
GTTACTGTTACTTGTTCTTGCCTAG
LOC_Os03g61570
Os.16297.1.S1_a_at--371--8791Chr03:34853619..34853643 (25 bp)
TGTTACTTGTTCTTGCCTAGCTGTA
LOC_Os03g61570
Os.16297.1.S1_a_at--889--6731Chr03:34853627..34853651 (25 bp)
GTTCTTGCCTAGCTGTAATGTTACT
LOC_Os03g61570
Os.16297.1.S1_a_at--313--7411Chr03:34853656..34853680 (25 bp)
GTGTTTTTAGTAGAGCGTGTAACGT
LOC_Os03g61570
Target Sequence 
CTACCCACCTAGCAACAGCAAGAGAGAGAGAAGCAGAGGAAAGGAGGCAGCCATGGGAAAGAGTGATTTGCTTGCTTAAC
ATGCATGATCTCAACCGGGAGAGACTAGACAGATCTCTACCCTTTTTTTTTCTTCTCCCCTGCTTAGTTTTTCCAGCTAA
TTAGTTCGATCAAAGTGGAAGCCAAGTTAATAATGATGATGATGATGTAGTAGCTGCTGTTCTTCCTGTTACTGTTACTT
GTTCTTGCCTAGCTGTAATGTTACTAGTAGTGTTTTTAGTAGAGCGTGTAACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16297.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis