Browse Element(s) Details


Os.16363.1.S1_at

Description gb:AK105566.1
DB_XREF= gi:32990775
TID=Os.16363.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16363 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-128-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-128-C08, full insert sequence.
FL= gb:AK105566.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3692011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36870OsAffx.5553.1.S1_at11/117+22080910..22082154F-box domain containing protein, expressed
LOC_Os07g36880Os.53498.1.S1_at11/117+22086306..22088716F-box domain containing protein, expressed
LOC_Os07g36890OsAffx.28786.1.S1_at11/117+22089230..22091643F-box domain containing protein
LOC_Os07g36900OsAffx.5554.1.S1_at11/117+22093436..22097583F-box domain containing protein
LOC_Os07g36910Os.22823.1.A1_at11/117+22100223..22103458F-box domain containing protein, expressed
LOC_Os07g36920Os.16363.1.S1_at11/117+22105972..22108442F-box domain containing protein, expressed
LOC_Os07g36930Os.51668.1.S1_at10/117+22109132..22111980expressed protein
LOC_Os07g36940Os.15271.1.S3_s_at11/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36940Os.15271.1.S2_s_at11/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36940Os.15271.1.S1_s_at11/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36940Os.15271.1.S4_at11/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36940Os.51591.1.S1_at2/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36950Os.53168.1.S2_at11/117+22123524..22126229expressed protein
LOC_Os07g36950Os.53168.1.S1_at11/117+22123524..22126229expressed protein
LOC_Os07g36960Os.53138.1.S1_at11/117+22126808..22128704expressed protein
LOC_Os07g36970OsAffx.29313.1.S1_at1/117+22129943..22132080hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16363.1.S1_at--614--9631Chr07:22107180..22107204 (25 bp)
TCAGGTGTGCTTTACGGTGGAGCTC
LOC_Os07g36920
Os.16363.1.S1_at--1109--6711Chr07:22107225..22107249 (25 bp)
GTTCTGTGAAACTAGGCGTACCTTG
LOC_Os07g36920
Os.16363.1.S1_at--1100--1031Chr07:22107252..22107276 (25 bp)
AGGTGCTGATCTGTTTGCTGGATTC
LOC_Os07g36920
Os.16363.1.S1_at--28--451Chr07:22107282..22107306 (25 bp)
ATCTTTGTCGCCACCAAGCGTATGA
LOC_Os07g36920
Os.16363.1.S1_at--1087--5031Chr07:22108159..22108183 (25 bp)
GCAGAGCCTCCATCAAACTTGTTTC
LOC_Os07g36920
Os.16363.1.S1_at--1093--2391Chr07:22108173..22108197 (25 bp)
AAACTTGTTTCCTGAGTGCGTGTAA
LOC_Os07g36920
Os.16363.1.S1_at--215--7211Chr07:22108210..22108234 (25 bp)
GTCGCTAAACCCAGTCTTTGTCAAA
LOC_Os07g36920
Os.16363.1.S1_at--29--3311Chr07:22108231..22108255 (25 bp)
CAAATTAGAGTTGGGCGCCTCGGGA
LOC_Os07g36920
Os.16363.1.S1_at--741--9951Chr07:22108312..22108336 (25 bp)
TACCCAGTCCGTCGGTTAAGTGTTG
LOC_Os07g36920
Os.16363.1.S1_at--764--7391Chr07:22108331..22108355 (25 bp)
GTGTTGGCCCGAACCAATGTCGGAA
LOC_Os07g36920
Os.16363.1.S1_at--477--7811Chr07:22108395..22108419 (25 bp)
GGTCTTGTGGACCATGTCGATTGAA
LOC_Os07g36920
Target Sequence 
TCAGGTGTGCTTTACGGTGGAGCTCAAGACTTTCAAGGTTGAGATGTTCTGTGAAACTAGGCGTACCTTGATAGGTGCTG
ATCTGTTTGCTGGATTCGCCCCATCTTTGTCGCCACCAAGCGTATGAAATGNGACAGATGGACGCTGGCCTTTCTCTGGA
TCATCCTTCTGGAGTTCTGGTGTTGGTGAAGGGACCATGATGGTGTATTGGTGTTGNACTTTTGTTCGGCTACAATGCTA
GCAGGCAGAGCCTCCATCAAACTTGTTTCCTGAGTGCGTGTAATCAAAACNAGCTGTCGCTAAACCCAGTCTTTGTCAAA
TTAGAGTTGGGCGCCTCGGGAAAAAGAAAGAATGAGAGTGTTGGGTAAAACCGAGTGTGTCGGATAGTGTTGGGCGGTAC
CCAGTCCGTCGGTTAAGTGTTGGCCCGAACCAATGTCGGAATAAGTGTTGTCTGTCAGAGTAAGTGTTGGCTGAAGTTGT
GGTCTTGTGGACCATGTCGATTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16363.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis