Browse Element(s) Details


Os.16391.1.S1_at

Description gb:AK066846.1
DB_XREF= gi:32976864
TID=Os.16391.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16391 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013088A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013088A03, full insert sequence.
FL= gb:AK066846.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1870011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18640OsAffx.12924.1.S1_at11/113+10422283..10425052Multicopper oxidase family protein, expressed
LOC_Os03g18650OsAffx.13097.1.S1_s_at11/113+10429868..10430538hypothetical protein
LOC_Os03g18660OsAffx.3270.1.S1_at11/113+10431282..10431818hypothetical protein
LOC_Os03g18670OsAffx.12925.1.S1_at11/113+10432606..10434090hypothetical protein
LOC_Os03g18680Os.51152.1.S1_at11/113+10436015..10438673expressed protein
LOC_Os03g18690Os.12727.1.S1_at11/113+10441483..1044527926S protease regulatory subunit 4 homolog, putative, expressed
LOC_Os03g18700Os.16391.1.S1_at11/113+10446403..10448912expressed protein
LOC_Os03g18710Os.4931.1.S1_s_at11/113+10449707..10455813expressed protein
LOC_Os03g18710OsAffx.12926.1.S1_at9/113+10449707..10455813expressed protein
LOC_Os03g18720Os.12051.1.S1_at11/113+10457166..10461633RNA recognition motif family protein, expressed
LOC_Os03g18729Os.6910.1.S1_at1/113+10463330..10463902hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16391.1.S1_at--57--1491Chr03:10447549..10447843 (25 bp)
AGCACAAGGCTCAAATTTGGACGGA
LOC_Os03g18700
Os.16391.1.S1_at--144--8532Chr09:20776644..20776671 (23 bp)
TGGACGGAGAAAGCATCACGATATC
NONE
Os.16391.1.S1_at--728--1871Chr03:10447515..10447539 (25 bp)
ACGATATCGATCTACAGTCTGGAAA
LOC_Os03g18700
Os.16391.1.S1_at--106--5491Chr03:10447495..10447518 (24 bp)
GAAAGTTAGCAACAAACGCCCAGGA
LOC_Os03g18700
Os.16391.1.S1_at--1058--2591Chr03:10447247..10447504 (25 bp)
AACGCCCAGGATACAATGCTAGTGA
LOC_Os03g18700
Os.16391.1.S1_at--687--5591Chr03:10446564..10446588 (25 bp)
GAAATACGCGGTTCTATCAAGGAGA
LOC_Os03g18700
Os.16391.1.S1_at--257--3211Chr03:10446547..10446571 (25 bp)
CAAGGAGATTATTTGCGTGCCCTAT
LOC_Os03g18700
Os.16391.1.S1_at--824--4651Chr03:10446533..10446557 (25 bp)
GCGTGCCCTATTAGTTAAGCGTGTA
LOC_Os03g18700
Os.16391.1.S1_at--9--9791Chr03:10446518..10446542 (25 bp)
TAAGCGTGTATGGTGCTCTGTTCTC
LOC_Os03g18700
Os.16391.1.S1_at--767--9471Chr03:10446502..10446526 (25 bp)
TCTGTTCTCGTTTGTGTGGTTTACA
LOC_Os03g18700
Os.16391.1.S1_at--347--7691Chr03:10446440..10446464 (25 bp)
GGGTTTCACTGAACACTGAGCATAC
LOC_Os03g18700
Target Sequence 
AGCACAAGGCTCAAATTTGGACGGAGAAAGCATCACGATATCGATCTACAGTCTGGAAAGTTAGCAACAAACGCCCAGGA
TACAATGCTAGTGACTCAGATTCAGATGATTCCAAGGAAACAGGCAAACAATCACATGTTACTGGAAAGTGACTACAAAA
CCAGCAAGGCAAGAAAAANTACCCCATGATGACATGATGTACCCCATGATGCATGAAATACGCGGTTCTATCAAGGAGAT
TATTTGCGTGCCCTATTAGTTAAGCGTGTATGGTGCTCTGTTCTCGTTTGTGTGGTTTACAAATTTACTTATCATTGAAA
ATGTAAAATTCTCAGGATGGGTTTCACTGAACACTGAGCATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16391.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis