Browse Element(s) Details


Os.166.1.S1_at

Description gb:D45383.1
DB_XREF= gi:1747293
TID=Os.166.1
CNT=63
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.166 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for vacuolar H+-pyrophosphatase, complete cds.
PROD=vacuolar H+-pyrophosphatase
FL= gb:AK119631.1 gb:D45383.1 gb:AK099807.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4366011/11Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43630OsAffx.15911.1.S1_x_at11/116+26241008..26248834Sucrose-phosphate synthase 1, putative, expressed
LOC_Os06g43630Os.27130.1.S1_at10/116+26241008..26248834Sucrose-phosphate synthase 1, putative, expressed
LOC_Os06g43640Os.11442.1.S1_at11/116+26253172..26258258expressed protein
LOC_Os06g43650Os.12151.1.S1_at11/116+26262130..26265825expressed protein
LOC_Os06g43650OsAffx.16811.1.S1_at1/116+26262130..26265825expressed protein
LOC_Os06g43660Os.166.2.S1_at11/116+26271901..26277667Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os06g43660Os.166.1.S1_at11/116+26271901..26277667Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os06g43670OsAffx.28086.1.S1_at11/116+26278807..26291348Leucine Rich Repeat family protein, expressed
LOC_Os06g43670Os.16349.1.S1_at1/116+26278807..26291348Leucine Rich Repeat family protein, expressed
LOC_Os06g43680Os.57572.1.S1_at11/116+26295682..26302262ankryin repeat S-palmitoyl transferase, putative, expressed
LOC_Os06g43680Os.53850.1.S1_at1/116+26295682..26302262ankryin repeat S-palmitoyl transferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009926biological_processauxin polar transport
GO:0010248biological_processestablishment and/or maintenance of transmembrane electrochemical gradient
GO:0005739cellular_componentmitochondrion
GO:0005794cellular_componentGolgi apparatus
GO:0005886cellular_componentplasma membrane
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0010008cellular_componentendosome membrane
GO:0009678molecular_functionhydrogen-translocating pyrophosphatase activity
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.166.1.S1_at--830--471Chr06:26276676..26276700 (25 bp)
ATCTGAGCATGCAAGGACCCTGGGC
LOC_Os06g43660
Os.166.1.S1_at--1157--7651Chr06:26276750..26276774 (25 bp)
GGGATCCTCTCAAGGACACCTCAGG
LOC_Os06g43660
Os.166.1.S1_at--565--2691Chr06:26276797..26276821 (25 bp)
AAGCTGATGGCTGTCGAGTCGCTCG
LOC_Os06g43660
Os.166.1.S1_at--913--8251Chr06:26276851..26276875 (25 bp)
GGCATCCTCTTCAAGTGGTTTTAGA
LOC_Os06g43660
Os.166.1.S1_at--70--10471Chr06:26276890..26276914 (25 bp)
TTACGAGGACGTTATTTTTGCCAGG
LOC_Os06g43660
Os.166.1.S1_at--710--211Chr06:26276984..26277008 (25 bp)
ATTTGTTATTACTGTCTGTCCATCA
LOC_Os06g43660
Os.166.1.S1_at--434--9471Chr06:26276998..26277022 (25 bp)
TCTGTCCATCAGTCGATCATGCTAA
LOC_Os06g43660
Os.166.1.S1_at--20--4951Chr06:26277031..26277055 (25 bp)
GCATCATACCTGTGTCTAGTTTTTT
LOC_Os06g43660
Os.166.1.S1_at--655--6251Chr06:26277076..26277100 (25 bp)
GATGGGAGCAAATCACTGGCCACCT
LOC_Os06g43660
Os.166.1.S1_at--994--1771Chr06:26277090..26277114 (25 bp)
ACTGGCCACCTACAGGTTTGGACAA
LOC_Os06g43660
Os.166.1.S1_at--1114--5211Chr06:26277124..26277148 (25 bp)
GAATTTGCGTTTTCCTGTAGGTTGG
LOC_Os06g43660
Target Sequence 
ATCTGAGCATGCAAGGACCCTGGGCCCGAAAGGCTCAGACTGCCACAAGGCTGCTGTGATCGGCGACACCATTGGGGATC
CTCTCAAGGACACCTCAGGCCCCTCGCTCAACATCCTCATCAAGCTGATGGCTGTCGAGTCGCTCGTGTTTGCCCCGTTC
TTCGCCACCCATGGAGGCATCCTCTTCAAGTGGTTTTAGATGGTGACGATAGATTTACGAGGACGTTATTTTTGCCAGGA
GGGCGCTGGAAATCATCCATATNTTATAGAGTTCATCGAGTTGACNCATATAGTTCCCTCCGTTTCCTATTTGTTATTAC
TGTCTGTCCATCAGTCGATCATGCTAAGCTTATTAGCATCATACCTGTGTCTAGTTTTTTTGAGTCTGGTAGTTGTAGCC
GATGGGAGCAAATCACTGGCCACCTACAGGTTTGGACAAGAGTACCTTGAATTTGCGTTTTCCTGTAGGTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.166.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis