Browse Element(s) Details


Os.16646.1.A1_at

Description gb:AK100198.1
DB_XREF= gi:32985407
TID=Os.16646.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16646 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023037N20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023037N20, full insert sequence.
FL= gb:AK073308.1 gb:AK100198.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5917011/11adenosine 5'-phosphosulfate reductase 8, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59140OsAffx.22848.3.S1_x_at2/113+33606647..33611287retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g59146OsAffx.8602.1.S1_s_at11/113+33619812..33624465hypothetical protein
LOC_Os03g59146OsAffx.8602.1.S1_x_at6/113+33619812..33624465hypothetical protein
LOC_Os03g59146Os.46735.1.S1_at4/113+33619812..33624465hypothetical protein
LOC_Os03g59152OsAffx.25764.4.S1_at11/113+33624739..33626671lethal leaf spot 1, putative
LOC_Os03g59152OsAffx.2812.1.S1_at1/113+33624739..33626671lethal leaf spot 1, putative
LOC_Os03g59160Os.25442.1.S1_at7/113+33627208..33631182Elongation factor P family protein, expressed
LOC_Os03g59170Os.16646.1.A1_at11/113+33632042..33635164adenosine 5'-phosphosulfate reductase 8, putative, expressed
LOC_Os03g59180Os.31151.2.S1_at11/113+33636039..33637411expressed protein
LOC_Os03g59190OsAffx.8923.1.S1_at9/113+33641413..33646074retrotransposon protein, putative, unclassified
LOC_Os03g59190Os.51887.1.S1_x_at1/113+33641413..33646074retrotransposon protein, putative, unclassified
LOC_Os03g59200Os.49605.1.A1_at11/113+33650407..33652500expressed protein
LOC_Os03g59210Os.12392.1.S1_at4/113+33655980..33656344hypothetical protein
LOC_Os03g59220Os.6828.1.S1_at11/113+33657474..33659565Ubiquinol-cytochrome c reductase complex 14 kDa protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16646.1.A1_at--669--4011Chr03:33634572..33634596 (25 bp)
CGTTTACTTCTGTTTCACTGGGTGA
LOC_Os03g59170
Os.16646.1.A1_at--351--5251Chr03:33634595..33634619 (25 bp)
GAATCATCATCCTCACGGCAAGCTT
LOC_Os03g59170
Os.16646.1.A1_at--219--10731Chr03:33634687..33634711 (25 bp)
TTGCTTCCGCATCCAGCTATATATG
LOC_Os03g59170
Os.16646.1.A1_at--385--291Chr03:33634712..33634736 (25 bp)
ATAGTTGCTTTGTTGCGCCATTCAG
LOC_Os03g59170
Os.16646.1.A1_at--462--1091Chr03:33634770..33634794 (25 bp)
AGGGCCTCACCTTGTTGTATACTAG
LOC_Os03g59170
Os.16646.1.A1_at--72--8191Chr03:33634794..33634818 (25 bp)
GGAATACCTTTTGCGTTGCGGATGC
LOC_Os03g59170
Os.16646.1.A1_at--4--7511Chr03:33634865..33634889 (25 bp)
GTGGTGCCAGTTTGAGTAGCCTTTA
LOC_Os03g59170
Os.16646.1.A1_at--800--4791Chr03:33634904..33634928 (25 bp)
GCTCCTGCTGCTGTATGAATCATTA
LOC_Os03g59170
Os.16646.1.A1_at--678--8191Chr03:33635065..33635089 (25 bp)
GGAAGATGCTCCTTTTGTATGTGAA
LOC_Os03g59170
Os.16646.1.A1_at--1052--3891Chr03:33635101..33635125 (25 bp)
CTGGAGATTTGTGAGTGCGTGCCCT
LOC_Os03g59170
Os.16646.1.A1_at--233--9151Chr03:33635116..33635140 (25 bp)
TGCGTGCCCTGTTCATAAATCTGCT
LOC_Os03g59170
Target Sequence 
CGTTTACTTCTGTTTCACTGGGTGAATCATCATCCTCACGGCAAGCTTAAGTGCTTAACCTTTTCGGGGCTGTTTGTTTA
GTGTAGCTGCACATGTGATCCAAAGTTATTTAATCTTGCTTCCGCATCCAGCTATATATGATAGTTGCTTTGTTGCGCCA
TTCAGGCATGTGGGAACCTCATGGTCATGTAAATTCTGAGGGCCTCACCTTGTTGTATACTAGGAATACCTTTTGCGTTG
CGGATGCAATGCCTAATCTTGTTGTCAAGATAACTACTGTAAATTTGAGATGTGTGGTGCCAGTTTGAGTAGCCTTTAGA
TGAATTTTTGTTGCTCCTGCTGCTGTATGAATCATTACAGTGTTAACCTTTGAAGAACTCTTAACTTGGTCGTTGTCTGC
ACCAGCCTGAAGCTGGGGCCGCCGACTCATGCCTTATTTACTGTGATTGTTATATGTACATCACCGTTTATAAGAAGCTA
ACNAAANTGTTTCTGGAAGATGCTCCTTTTGTATGTGAATCTATTGTTTACTGGAGATTTGTGAGTGCGTGCCCTGTTCA
TAAATCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16646.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis