Browse Element(s) Details


Os.16838.1.S1_at

Description gb:AK108483.1
DB_XREF= gi:32993692
TID=Os.16838.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.16838 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-F06, full insert sequence.
FL= gb:AK108483.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5196011/11UPF0308 protein, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51900Os.14204.1.S1_at11/113+29716693..29724741DEAD/DEAH box helicase family protein, expressed
LOC_Os03g51910Os.24540.1.A1_at11/113+29725371..29727471Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g51920Os.17136.1.S1_at11/113+29735174..29737573expressed protein
LOC_Os03g51930Os.19523.1.S1_at11/113+29739046..29741681expressed protein
LOC_Os03g51940NANA3+29743049..29743348NA
LOC_Os03g51950Os.23313.1.S1_x_at11/113+29745306..29748361expressed protein
LOC_Os03g51960Os.16838.1.S1_at11/113+29749203..29751079UPF0308 protein, chloroplast precursor, putative, expressed
LOC_Os03g51960Os.23313.1.S1_x_at1/113+29749203..29751079UPF0308 protein, chloroplast precursor, putative, expressed
LOC_Os03g51970Os.49751.1.S1_at10/113+29774009..29776376expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16838.1.S1_at--286--9431Chr03:29750382..29750406 (25 bp)
TCGGGACTCCTGACAAAGCTCGCAT
LOC_Os03g51960
Os.16838.1.S1_at--776--2351Chr03:29750369..29750392 (24 bp)
AAAGCTCGCATTCTCGCCGATGGGC
LOC_Os03g51960
Os.16838.1.S1_at--1102--9171Chr03:29750053..29750077 (25 bp)
TGCCGTTCCCTGTTGATAGCTTGTA
LOC_Os03g51960
Os.16838.1.S1_at--277--8831Chr03:29750040..29750064 (25 bp)
TGATAGCTTGTACGCTGACCCCGAG
LOC_Os03g51960
Os.16838.1.S1_at--335--4231Chr03:29749933..29750044 (25 bp)
CCGAGCGCAAGGCTTACGACGTATT
LOC_Os03g51960
Os.16838.1.S1_at--941--10331Chr03:29749903..29749927 (25 bp)
TTTACCATGGTCTGGGTCGGACATT
LOC_Os03g51960
Os.16838.1.S1_at--595--2731Chr03:29749711..29749735 (25 bp)
AAGAACTACACGCTCAAGGGCACAC
LOC_Os03g51960
Os.16838.1.S1_at--1039--1371Chr03:29749682..29749706 (25 bp)
AGACCTGACGGGTATCTTGCAGCAG
LOC_Os03g51960
Os.16838.1.S1_at--602--711Chr03:29749454..29749478 (25 bp)
ATGATGTCCTCAACGCTTGCTGCAA
LOC_Os03g51960
Os.16838.1.S1_at--797--2511Chr03:29749426..29749450 (25 bp)
AACTTCTTGAGGTCTCTAGCAGTCG
LOC_Os03g51960
Os.16838.1.S1_at--943--8131Chr03:29749262..29749286 (25 bp)
GGACATGACACTACAGTCTGAACTC
LOC_Os03g51960
Target Sequence 
TCGGGACTCCTGACAAAGCTCGCATTCTCGCCGATGGGCTGCCGTTCCCTGTTGATAGCTTGTACGCTGACCCCGAGCGC
AAGGCTTACGACGTATTGGGGCTTTACCATGGTCTGGGTCGGACATTAATCAGTCCTGCGAAGATGTACTCGGGGCTTAA
TTCCATCAAGAAGGTAACCAAGAACTACACGCTCAAGGGCACACCAGCAGACCTGACGGGTATCTTGCAGCAGGGTGGTA
TGCTTGTGTTCAGAGGGAAAGAGTTGCTGTACTCATGGAAAGACNAAAGGCACGGGTGATCATGCTCCTCTGGATGATGT
CCTCAACGCTTGCTGCAATCNAACTTCTTGAGGTCTCTAGCAGTCGGAAGATGTGTATGTAAATATATGAAATGCTCAGC
ATGCCAAACNAGAGAGCAATTAGACTCAACAGTACTAGATGTTCGATTAATTATGCATTGTTGGTTTGCTTATGTACTTA
GCATGATATTGGATTAGCTACCCNATGGACATGACACTACAGTCTGAACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16838.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis