Browse Element(s) Details


Os.169.1.S1_at

Description gb:D55708.1
DB_XREF= gi:2696220
TID=Os.169.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.169 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for chitinase, complete cds.
PROD=chitinase
FL= gb:D55708.1 gb:AK073800.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4753011/11Xylanase inhibitor protein 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47470Os.27639.1.S1_x_at2/1111+28150033..28153819retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os11g47480OsAffx.19424.1.S1_at10/1111+28155307..28157423hypothetical protein
LOC_Os11g47490OsAffx.19425.1.S1_at11/1111+28160381..28161239Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os11g47494NANA11+28162148..28162654hypothetical protein
LOC_Os11g47500Os.172.1.S1_a_at11/1111+28164543..28166059Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47510Os.4670.1.S1_at11/1111+28169475..28170818Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47520Os.25636.1.S1_at11/1111+28172142..28173317Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47530Os.169.1.S1_at11/1111+28175114..28176274Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47550Os.9964.1.S1_at11/1111+28177983..28179140Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47560Os.50837.1.S1_at11/1111+28181613..28182631Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47560Os.49578.1.S1_x_at1/1111+28181613..28182631Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47570Os.49578.1.S1_x_at11/1111+28190097..28190950Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47570Os.50837.1.S1_at2/1111+28190097..28190950Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47580Os.9347.1.S1_at11/1111+28195854..28197103Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47590Os.51920.1.S1_at11/1111+28197991..28199150Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47600Os.32890.1.S1_at11/1111+28200834..28202000Xylanase inhibitor protein 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.169.1.S1_at--357--4411Chr11:28175733..28175757 (25 bp)
GCCACTACAAGTTCGAGATGCTGCT
LOC_Os11g47530
Os.169.1.S1_at--374--9691Chr11:28175823..28175847 (25 bp)
TCACGCACATCCACGTCCGGGTGTT
LOC_Os11g47530
Os.169.1.S1_at--343--9971Chr11:28175975..28175999 (25 bp)
TACCTGCCGCGTAAGGTTCTCTTCT
LOC_Os11g47530
Os.169.1.S1_at--129--7071Chr11:28175985..28176009 (25 bp)
GTAAGGTTCTCTTCTCCGACGTGCT
LOC_Os11g47530
Os.169.1.S1_at--308--9671Chr11:28176009..28176033 (25 bp)
TCAGCCACATCGTCGAGAAGCCCAA
LOC_Os11g47530
Os.169.1.S1_at--255--5411Chr11:28176025..28176049 (25 bp)
GAAGCCCAACTATGGTGGATTGATG
LOC_Os11g47530
Os.169.1.S1_at--563--8851Chr11:28176045..28176069 (25 bp)
TGATGATCTGGGATAGGTACTACGA
LOC_Os11g47530
Os.169.1.S1_at--619--2771Chr11:28176074..28176098 (25 bp)
AAGACCGGCTACTCCGCTGGAAAAG
LOC_Os11g47530
Os.169.1.S1_at--413--131Chr11:28176128..28176152 (25 bp)
ATTAGTTAACCATGGTGACCAATAC
LOC_Os11g47530
Os.169.1.S1_at--282--7511Chr11:28176184..28176208 (25 bp)
GTGGTTTTGTCAATGATGTGCTTCT
LOC_Os11g47530
Os.169.1.S1_at--75--3011Chr11:28176195..28176219 (25 bp)
AATGATGTGCTTCTATGCTCATAAA
LOC_Os11g47530
Target Sequence 
GCCACTACAAGTTCGAGATGCTGCTGACGGCGACGACGAGGTGCTCGTACCCGGACCACCGCCTCGACATGGCGCTGGCG
ACGGGGCTGTTCACGCACATCCACGTCCGGGTGTTCGGCGGCGGNCGGCGACGCCGGCTGCACGACGCGCCACAGGGCGT
CGTGGGAGAGGTGGGCGGCGGCGTACCCCGGCAGCCTGGTGTACCTCGGCGTGGTGGCCTCGCCGGAGCAGGACGCCAAC
GCCTACCTGCCGCGTAAGGTTCTCTTCTCCGACGTGCTCAGCCACATCGTCGAGAAGCCCAACTATGGTGGATTGATGAT
CTGGGATAGGTACTACGACAAGAAGACCGGCTACTCCGCTGGAAAAGTTTTTTAATTAACTTCCAATAGACTGGAAATTA
GTTAACCATGGTGACCAATACTAATGAATAAGGATTTGTAGAAAACAAGGATGTGGTTTTGTCAATGATGTGCTTCTATG
CTCATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.169.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis