Browse Element(s) Details


Os.16976.1.S1_at

Description gb:AK105748.1
DB_XREF= gi:32990957
TID=Os.16976.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.16976 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-202-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-202-B08, full insert sequence.
FL= gb:AK105748.1 gb:AK067768.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0250011/11MAP kinase phosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02450Os.54606.1.S1_at11/115+813789..816137expressed protein
LOC_Os05g02450Os.56980.1.S1_at11/115+813789..816137expressed protein
LOC_Os05g02460OsAffx.26694.1.S1_at11/115+819840..820509hypothetical protein
LOC_Os05g02470OsAffx.14504.1.S1_at10/115+823531..825261hypothetical protein
LOC_Os05g02480Os.6237.1.S1_at11/115+827192..828400expressed protein
LOC_Os05g02490Os.7790.1.S1_at11/115+829801..836087Adenosine 3'-phospho 5'-phosphosulfate transporter 1, putative, expressed
LOC_Os05g02490OsAffx.21596.1.S1_at1/115+829801..836087Adenosine 3'-phospho 5'-phosphosulfate transporter 1, putative, expressed
LOC_Os05g02500OsAffx.14505.1.S1_x_at11/115+836423..840267MAP kinase phosphatase, putative, expressed
LOC_Os05g02500OsAffx.14505.1.S1_at11/115+836423..840267MAP kinase phosphatase, putative, expressed
LOC_Os05g02500Os.16976.1.S1_at11/115+836423..840267MAP kinase phosphatase, putative, expressed
LOC_Os05g02510Os.9285.1.S1_s_at10/115+843032..848821Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os05g02520Os.28047.1.S1_at11/115+851191..854118legumin, putative, expressed
LOC_Os05g02530Os.12706.1.S1_at11/115+854974..858517dehydroascorbate reductase, putative, expressed
LOC_Os05g02540Os.56308.1.S1_at3/115+861727..862626hypothetical protein
LOC_Os05g02550NANA5+863060..864028F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009651biological_processresponse to salt stress
GO:0010225biological_processresponse to UV-C
GO:0017017molecular_functionMAP kinase phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16976.1.S1_at--695--5271Chr05:836798..836822 (25 bp)
GAATGAAGGCATCTCCTCCAGAATC
LOC_Os05g02500
Os.16976.1.S1_at--885--3411Chr05:836780..836804 (25 bp)
CAGAATCGCTCCATGCGGTGGTGAT
LOC_Os05g02500
Os.16976.1.S1_at--214--6551Chr05:836758..836782 (25 bp)
GATTTTCAGCGAGGTATAAGCCGTT
LOC_Os05g02500
Os.16976.1.S1_at--965--9991Chr05:836744..836768 (25 bp)
TATAAGCCGTTACAACTATTCCCCT
LOC_Os05g02500
Os.16976.1.S1_at--827--10651Chr05:836726..836750 (25 bp)
TTCCCCTTGAACATATAGACCACAG
LOC_Os05g02500
Os.16976.1.S1_at--207--10031Chr05:836711..836735 (25 bp)
TAGACCACAGATTCCATTTAGTAGA
LOC_Os05g02500
Os.16976.1.S1_at--89--5211Chr05:836671..836695 (25 bp)
GCAATTGTGCCTACCTCATATGATT
LOC_Os05g02500
Os.16976.1.S1_at--50--991Chr05:836624..836648 (25 bp)
AGGAGGCTGCCAGAACGTTGTATCT
LOC_Os05g02500
Os.16976.1.S1_at--116--2191Chr05:836587..836611 (25 bp)
ACACATGGATCAGGTTTTGGCACAA
LOC_Os05g02500
Os.16976.1.S1_at--724--3111Chr05:836564..836588 (25 bp)
AATTTGGGTGTATATTCTCCGCTCC
LOC_Os05g02500
Os.16976.1.S1_at--264--9291Chr05:836547..836571 (25 bp)
TCCGCTCCCCTGTAATGTAAGCTCA
LOC_Os05g02500
Target Sequence 
GAATGAAGGCATCTCCTCCAGAATCGCTCCATGCGGTGGTGATTTTCAGCGAGGTATAAGCCGTTACAACTATTCCCCTT
GAACATATAGACCACAGATTCCATTTAGTAGAACTGATGATGGATTGGCAATTGTGCCTACCTCATATGATTTGCTTATG
GTCAGAAAATGGGCAGGAGGCTGCCAGAACGTTGTATCTGTGAGTTAAAACACACATGGATCAGGTTTTGGCACAATTTG
GGTGTATATTCTCCGCTCCCCTGTAATGTAAGCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16976.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis