Browse Element(s) Details


Os.170.3.S1_at

Description gb:AK069860.1
DB_XREF= gi:32979884
TID=Os.170.3
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.170 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) chitinase (P0489B03.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023035H08, full insert sequence.
FL= gb:AK069860.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6412010/11Ferredoxin-2, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64070Os.46862.1.S1_at10/111+37537699..37543973retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g64070OsAffx.22385.1.S1_x_at5/111+37537699..37543973retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g64070OsAffx.20329.1.S1_at2/111+37537699..37543973retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g64080OsAffx.16451.1.A1_x_at2/111+37549567..37555857retrotransposon protein, putative, unclassified
LOC_Os01g64080OsAffx.22699.1.S1_x_at2/111+37549567..37555857retrotransposon protein, putative, unclassified
LOC_Os01g64080OsAffx.16451.1.A1_at1/111+37549567..37555857retrotransposon protein, putative, unclassified
LOC_Os01g64080Os.45161.1.A1_x_at1/111+37549567..37555857retrotransposon protein, putative, unclassified
LOC_Os01g64080OsAffx.8279.1.S1_at1/111+37549567..37555857retrotransposon protein, putative, unclassified
LOC_Os01g64090Os.11487.1.S1_s_at11/111+37558356..3756150060S ribosomal protein L10a-1, putative, expressed
LOC_Os01g64090OsAffx.2398.1.S1_at11/111+37558356..3756150060S ribosomal protein L10a-1, putative, expressed
LOC_Os01g64100Os.28531.1.S1_at11/111+37562630..37564055Acidic endochitinase precursor, putative, expressed
LOC_Os01g64110Os.170.1.S1_at11/111+37566432..37567624Hevamine A precursor, putative, expressed
LOC_Os01g64120Os.170.3.S1_at10/111+37568006..37568936Ferredoxin-2, chloroplast precursor, putative, expressed
LOC_Os01g64130NANA1+37572420..37573484hypothetical protein
LOC_Os01g64140NANA1+37575693..37576265hypothetical protein
LOC_Os01g64150Os.47463.1.S1_x_at3/111+37584987..37588684transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g64150Os.14491.2.S1_x_at2/111+37584987..37588684transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g64160NANA1+37591411..37594743transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009416biological_processresponse to light stimulus
GO:0009767biological_processphotosynthetic electron transport
GO:0009570cellular_componentchloroplast stroma
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.170.3.S1_at--230--3131NONE
AATTATAGCGCACCGGGCGTCGTCG
NONE
Os.170.3.S1_at--862--5431Chr01:37568444..37568468 (25 bp)
GAACCTGCAGCTAACGTCGGGCGGC
LOC_Os01g64120
Os.170.3.S1_at--1061--6711Chr01:37568474..37568498 (25 bp)
GTTCTCCGGCAGGTTCAGGGCGTCC
LOC_Os01g64120
Os.170.3.S1_at--200--7851Chr01:37568722..37568746 (25 bp)
GGTACGTGCTCACGTGCATCTCGTA
LOC_Os01g64120
Os.170.3.S1_at--103--7331Chr01:37568735..37568759 (25 bp)
GTGCATCTCGTACCCCAAGTCGGAC
LOC_Os01g64120
Os.170.3.S1_at--600--4151Chr01:37568748..37568772 (25 bp)
CCCAAGTCGGACTGCGTCATCTACA
LOC_Os01g64120
Os.170.3.S1_at--1058--6131Chr01:37568787..37568811 (25 bp)
GAGGTGCACTAGATAGAGTCCATGT
LOC_Os01g64120
Os.170.3.S1_at--754--291Chr01:37568799..37568823 (25 bp)
ATAGAGTCCATGTCGATCGCGGGTC
LOC_Os01g64120
Os.170.3.S1_at--396--9391Chr01:37568811..37568835 (25 bp)
TCGATCGCGGGTCGTGATTCCTGAT
LOC_Os01g64120
Os.170.3.S1_at--27--6651Chr01:37568854..37568878 (25 bp)
GTTGTTGTTCCAATATGGCACGTTA
LOC_Os01g64120
Os.170.3.S1_at--1124--8491Chr01:37568869..37568893 (25 bp)
TGGCACGTTATATGGAAGTCTATGA
LOC_Os01g64120
Target Sequence 
AATTATAGCGCACCGGGCGTCGTCGCTGATCCCCCGAAGCTGCTGAGTCGTCCGGGGAACCTGCAGCTAACGTCGGGCGG
CGCGCGGTTCTCCGGCAGGTTCAGGGCGTCCGCGGCGGCCGTGCACAAGGTGAAGCTCATCGGGCCNGGACGGCGCGGAG
AGCGAGCTCGAGGTGCCCGAGGACACCTACGTCCTCGACGCCGCCGAGGAGGCCGGCCTGGAGCNGCCTTANCTCGTGCC
GGGCCGGCTCGTGCTCCACGTGCGCCGGCAAGCTGGCCTCCGGCGAGGTCGACCAGTCGGACGGGTCGTTCCTGGCCGAC
GAGCAGATCGAGCAGGGGTACGTGCTCACGTGCATCTCGTACCCCAAGTCGGACTGCGTCATCTACACCCACAAGGAAGA
GGAGGTGCACTAGATAGAGTCCATGTCGATCGCGGGTCGTGATTCCTGATNCTGATGTAAATCAAAATGTTGTTGTTCCA
ATATGGCACGTTATATGGAAGTCTATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.170.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis