Browse Element(s) Details


Os.17209.1.S1_at

Description gb:BI812374
DB_XREF= gi:16578279
DB_XREF=E003C08
CLONE=E003C08
TID=Os.17209.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.17209 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative tubulin-folding cofactor (OSJNBb0091N21.28), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3649011/11tubulin folding cofactor D, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36430NANA10+19160027..19166462retrotransposon protein, putative, unclassified
LOC_Os10g36440Os.28943.1.S1_x_at2/1110+19167086..19170306retrotransposon protein, putative, unclassified
LOC_Os10g36450Os.47130.4.A1_x_at1/1110+19171247..19171573retrotransposon protein, putative, unclassified
LOC_Os10g36450Os.37083.2.S1_at1/1110+19171247..19171573retrotransposon protein, putative, unclassified
LOC_Os10g36460NANA10+19175966..19179679retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g36470Os.6154.1.S1_a_at11/1110+19182941..19187182methionine aminopeptidase 1, putative, expressed
LOC_Os10g36470OsAffx.28284.1.S1_at3/1110+19182941..19187182methionine aminopeptidase 1, putative, expressed
LOC_Os10g36490Os.17209.1.S1_at11/1110+19187274..19195752tubulin folding cofactor D, putative, expressed
LOC_Os10g36480Os.14040.1.S1_at11/1110+19195983..19198906expressed protein
LOC_Os10g36500Os.7756.2.S1_x_at11/1110+19200479..19202642pectinesterase inhibitor domain containing protein, expressed
LOC_Os10g36500Os.7756.2.S1_at11/1110+19200479..19202642pectinesterase inhibitor domain containing protein, expressed
LOC_Os10g36500Os.7756.1.S1_at10/1110+19200479..19202642pectinesterase inhibitor domain containing protein, expressed
LOC_Os10g36510OsAffx.30486.1.S1_at1/1110+19204322..19206481hypothetical protein
LOC_Os10g36520Os.46807.1.S1_at11/1110+19209997..19210891expressed protein
LOC_Os10g36530Os.27528.1.S1_at11/1110+19211723..19219457MutS domain V family protein, expressed
LOC_Os10g36530Os.27528.1.S1_x_at11/1110+19211723..19219457MutS domain V family protein, expressed
LOC_Os10g36530Os.54568.1.S1_x_at11/1110+19211723..19219457MutS domain V family protein, expressed
LOC_Os10g36530Os.54568.1.S1_at7/1110+19211723..19219457MutS domain V family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000910biological_processcytokinesis
GO:0006457biological_processprotein folding
GO:0007017biological_processmicrotubule-based process
GO:0007021biological_processtubulin folding
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0015631molecular_functiontubulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17209.1.S1_at--542--4511Chr10:19187763..19187787 (25 bp)
GCCGCAGCTGATCAGGTGTACCTCG
LOC_Os10g36490
Os.17209.1.S1_at--1128--7431Chr10:19187748..19187772 (25 bp)
GTGTACCTCGTACTGCTGCAAAATG
LOC_Os10g36490
Os.17209.1.S1_at--88--2991Chr10:19187727..19187751 (25 bp)
AATGATAGTTTGATCGCCGCGGAAA
LOC_Os10g36490
Os.17209.1.S1_at--668--2351Chr10:19187694..19187718 (25 bp)
AAAGCCCAGGAAGTCATCGCGGAGA
LOC_Os10g36490
Os.17209.1.S1_at--1125--2551Chr10:19187624..19187648 (25 bp)
AACTGAATGAGATGGCCGGCTTCGG
LOC_Os10g36490
Os.17209.1.S1_at--1158--9551Chr10:19187514..19187538 (25 bp)
TCTTACTCTTCTTTGGTTGATTTCA
LOC_Os10g36490
Os.17209.1.S1_at--568--10091Chr10:19187481..19187505 (25 bp)
TAGGAAGCAGGAAGTTCCGCCTTTT
LOC_Os10g36490
Os.17209.1.S1_at--645--9311Chr10:19187453..19187477 (25 bp)
TCCCTGTGCGTTTTTGGTTGTTTTG
LOC_Os10g36490
Os.17209.1.S1_at--803--2951Chr10:19187425..19187449 (25 bp)
AATGGTTGAGGCGACACTTGTACAC
LOC_Os10g36490
Os.17209.1.S1_at--962--3311Chr10:19187411..19187435 (25 bp)
CACTTGTACACTAGCATTGCCCAAT
LOC_Os10g36490
Os.17209.1.S1_at--175--6871Chr10:19187328..19187352 (25 bp)
GTTTGTAGCATTTTCTGCCATAGGA
LOC_Os10g36490
Target Sequence 
GCCGCAGCTGATCAGGTGTACCTCGTACTGCTGCAAAATGATAGTTTGATCGCCGCGGAAAATATGGAAAAAGCCCAGGA
AGTCATCGCGGAGACATGCTGGGAAGGGGATGTGGAGGAAGCTAGGCGCAAGAGGTCAGAACTGAATGAGATGGCCGGCT
TCGGCGCCGCCACTTCACAGAAGCCTGGGAATGAACAAACAAGGAGGAAAACCGAAGAGAGAAATGCTGCTTCAACTGAC
GAGAACAAATCTTACTCTTCTTTGGTTGATTTCAGTGGATACTAGGAAGCAGGAAGTTCCGCCTTTTCCCTCCCTGTGCG
TTTTTGGTTGTTTTGCGAAATGGTTGAGGCGACACTTGTACACTAGCATTGCCCAATGCCCCAATTGCACAATTTACACT
AGTGTAGAAACTTTGCAGAAAAGAATAGTTGTTTTGTTTGTAGCATTTTCTGCCATAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17209.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis