Browse Element(s) Details


Os.17229.1.S1_at

Description gb:AK108514.1
DB_XREF= gi:32993723
TID=Os.17229.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17229 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-144-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-144-A08, full insert sequence.
FL= gb:AK108514.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4592010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45860Os.53431.1.S1_at11/112+27953928..27954689expressed protein
LOC_Os02g45870Os.53134.1.S1_at11/112+27956356..27959345tobamovirus multiplication protein 3, putative, expressed
LOC_Os02g45870Os.53054.1.S1_at11/112+27956356..27959345tobamovirus multiplication protein 3, putative, expressed
LOC_Os02g45880OsAffx.12512.1.S1_at11/112+27959724..27960431expressed protein
LOC_Os02g45890OsAffx.2974.1.S1_s_at11/112+27961606..27962975Sulfotransferase domain containing protein, expressed
LOC_Os02g45900OsAffx.2975.1.S1_at11/112+27964235..27966164hypothetical protein
LOC_Os02g45910OsAffx.12696.1.S1_at11/112+27971718..27973941tRNA-splicing endonuclease positive effector, putative
LOC_Os02g45920Os.17229.1.S1_at10/112+27979070..27983486expressed protein
LOC_Os02g45930Os.49582.1.S1_at11/112+27983621..27984706expressed protein
LOC_Os02g45940OsAffx.24745.1.S1_at11/112+27988208..27988861Histone H4, putative, expressed
LOC_Os02g45950OsAffx.12513.1.S1_at10/112+27989249..27992709expressed protein
LOC_Os02g45960Os.35344.18.S1_x_at11/112+27994680..28001388transposon protein, putative, Mutator sub-class
LOC_Os02g45960Os.35344.3.S1_x_at9/112+27994680..28001388transposon protein, putative, Mutator sub-class
LOC_Os02g45960OsAffx.22940.5.S1_x_at4/112+27994680..28001388transposon protein, putative, Mutator sub-class
LOC_Os02g45960OsAffx.22940.5.S1_at3/112+27994680..28001388transposon protein, putative, Mutator sub-class
LOC_Os02g45969NANA2+28004107..28005249NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17229.1.S1_at--399--4751Chr02:27982947..27982971 (25 bp)
GCTGAGCCTGTTTATTGAGTACCGT
LOC_Os02g45920
Os.17229.1.S1_at--1142--1171Chr02:27982964..27982988 (25 bp)
AGTACCGTGCTGTCTGAACTTGGCA
LOC_Os02g45920
Os.17229.1.S1_at--845--10431Chr02:27983095..27983119 (25 bp)
TTATGACTCTCATTCAGGTTCAGGG
LOC_Os02g45920
Os.17229.1.S1_at--543--7531Chr02:27983153..27983177 (25 bp)
GTGGCATTTTCTGCTCATAATCGTC
LOC_Os02g45920
Os.17229.1.S1_at--1023--6451NONE
GATAATTACATTTCTGCACTGGGAA
NONE
Os.17229.1.S1_at--96--9191Chr02:27983279..27983303 (25 bp)
TGCCGGTGAACCTGCTGTATACTAC
LOC_Os02g45920
Os.17229.1.S1_at--52--10551Chr02:27983306..27983330 (25 bp)
TTCATTTTCTCACCCTGGAGTTGTA
LOC_Os02g45920
Os.17229.1.S1_at--237--5551Chr02:27983355..27983379 (25 bp)
GAAACCAGAGCTGTGCTGAACTCAA
LOC_Os02g45920
Os.17229.1.S1_at--781--8511Chr02:27983389..27983413 (25 bp)
TGGAATTTTCGTTCTCACAATGTAA
LOC_Os02g45920
Os.17229.1.S1_at--1096--6771Chr02:27983421..27983445 (25 bp)
GTTAGTCTTACCCACTTAACAGCTT
LOC_Os02g45920
Os.17229.1.S1_at--201--4911Chr02:27983442..27983466 (25 bp)
GCTTCACCTGAAGTTCTAGTCAAAT
LOC_Os02g45920
Target Sequence 
GCTGAGCCTGTTTATTGAGTACCGTGCTGTCTGAACTTGGCATCCTGTNCCAAATCCTTACCGGCCATTTAAATTATTCT
TGGATGAAGGTTNTTTCGTTTTGGATTTGGATGGGAGAGTTTGTTTGACTATGAATCTTTCGAACAGATTATGACTCTCA
TTCAGGTTCAGGGGGCCAATATTTTATATCAAGAACGACTTGGATAGTGGCATTTTCTGCTCATAATCGTCAGGATGTAA
GAAAGACATGAACTGTTATACCTATGGAGAGCTTTTCAAANGATAATTACATTTCTGCACTGGGAAAAAGCCACGCTGGT
TTTGAAAAACTATGCCGGTGAACCTGCTGTATACTACTTTTCATTTTCTCACCCTGGAGTTGTAATCTGTATGTTGTCAT
GGGAGAAGGAAACCAGAGCTGTGCTGAACTCAATAGGCTTATTGGAATTTTCGTTCTCACAATGTAACTTGTTTGTTAGT
CTTACCCACTTAACAGCTTCACCTGAAGTTCTAGTCAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17229.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis