Browse Element(s) Details

Os.17353.1.S1_at

Description

gb:AK100655.1
DB_XREF= gi:32985864
TID=Os.17353.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17353 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023111G13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023111G13, full insert sequence.
FL= gb:AK100655.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g45380	10/11	Vacuolar sorting receptor 7 precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g45350	Os.34343.1.S2_at	11/11	6	+	27411681..27416604	protein kinase, putative, expressed
LOC_Os06g45350	Os.34343.1.S1_a_at	11/11	6	+	27411681..27416604	protein kinase, putative, expressed
LOC_Os06g45350	Os.49575.1.S1_at	11/11	6	+	27411681..27416604	protein kinase, putative, expressed
LOC_Os06g45350	Os.34343.1.S2_s_at	11/11	6	+	27411681..27416604	protein kinase, putative, expressed
LOC_Os06g45360	Os.51301.1.S1_at	11/11	6	+	27418371..27426848	metallopeptidase family M24 containing protein, expressed
LOC_Os06g45360	Os.51301.1.S1_x_at	11/11	6	+	27418371..27426848	metallopeptidase family M24 containing protein, expressed
LOC_Os06g45370	Os.15065.1.S1_at	11/11	6	+	27427893..27430110	fructose-1,6-bisphosphatase family protein, expressed
LOC_Os06g45380	OsAffx.28116.1.S1_s_at	11/11	6	+	27432423..27440151	Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os06g45380	OsAffx.28116.1.S1_x_at	11/11	6	+	27432423..27440151	Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os06g45380	Os.17353.1.S1_at	10/11	6	+	27432423..27440151	Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os06g45380	Os.20764.1.S1_s_at	1/11	6	+	27432423..27440151	Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os06g45390	OsAffx.15936.1.S1_at	10/11	6	+	27440488..27443852	expressed protein
LOC_Os06g45399	NA	NA	6	+	27445969..27446559	NA
LOC_Os06g45410	Os.50003.1.S1_at	11/11	6	+	27455060..27458560	myb family transcription factor-related protein, putative, expressed
LOC_Os06g45420	OsAffx.15937.1.S1_at	11/11	6	+	27461108..27462017	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0006623	biological_process	protein targeting to vacuole
GO:0006886	biological_process	intracellular protein transport
GO:0005802	cellular_component	Golgi trans face
GO:0005887	cellular_component	integral to plasma membrane
GO:0017119	cellular_component	Golgi transport complex

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.17353.1.S1_at--820--261	1	Chr06:27439452..27439476 (25 bp)	AACCCCTTCGACAGCATGATTCAGA	LOC_Os06g45380
Os.17353.1.S1_at--678--885	1	Chr06:27439684..27439708 (25 bp)	TGATCCCAGACCATACTCAGCAGAT	LOC_Os06g45380
Os.17353.1.S1_at--302--83	1	Chr06:27439760..27439784 (25 bp)	ATGGTTTGTACCGAGCCACAGTGAT	LOC_Os06g45380
Os.17353.1.S1_at--375--157	1	Chr06:27439801..27439825 (25 bp)	AGCTAGGTAGGCATTTCTGCTCTCA	LOC_Os06g45380
Os.17353.1.S1_at--894--19	1	Chr06:27439813..27439837 (25 bp)	ATTTCTGCTCTCATGTGGAACGACA	LOC_Os06g45380
Os.17353.1.S1_at--347--289	1	Chr06:27439955..27439979 (25 bp)	AAGGTGTTTCTGTCTATTTGGAGTT	LOC_Os06g45380
Os.17353.1.S1_at--62--125	1	Chr06:27439976..27440000 (25 bp)	AGTTGTTTTGGCATGCTTTCCTGAA	LOC_Os06g45380
Os.17353.1.S1_at--832--605	1	Chr06:27440038..27440062 (25 bp)	GAGTTGATCACTTGCTGGTTTTCTT	LOC_Os06g45380
Os.17353.1.S1_at--640--1015	1	Chr06:27440074..27440100 (25 bp)	TATCGCCGACGCCAAGTATCTAATA	LOC_Os06g45380
Os.17353.1.S1_at--979--125	1	NONE	AGATTCTTGATCCAGGCCATGTGGA	NONE
Os.17353.1.S1_at--603--803	1	Chr06:27440125..27440149 (25 bp)	GGAGTGATCATAAAACCTTCTTCTT	LOC_Os06g45380

Target Sequence

AACCCCTTCGACAGCATGATTCAGAGGCTTAAGGGACCTGGCCANTTTGATGGAGAATTTGGTTAGCTATATACCTTGTG
AAGAGATTGATACANAAGATGGGCTATGAGTTCAAGGGAACTAGTTATGGTGATCCCAGACCATACTCAGCAGATACTTA
AGTGTGCTTCCAATGATTTTAGCTTCATTTTTGTATAGTAAAAGAAATGGTTTGTACCGAGCCACAGTGATTGANCNATA
GAGAAGTAGCTAGGTAGGCATTTCTGCTCTCATGTGGAACGACATACAATACAATACACACAGAATTTTTAGAAAAGAAA
AATACANGGTGGCAGTGTATCATAGTCATAGATAACCATATTAAGAAAAATATGGATGGCGGTGTATCAAAAACCATAAA
ATAAGGTGTTTCTGTCTATTTGGAGTTGTTTTGGCATGCTTTCCTGAAAACACCNAGGCTCTTGTTTTCAGAAATCCATG
ATAAGAGAGTTGATCACTTGCTGGTTTTCTTGTGGGCTATGATATCGCCGACGCCAAGTATCTAATAAAAGATTCTTGAT
CCAGGCCATGTGGAGTGATCATAAAACCTTCTTCTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis