Browse Element(s) Details


Os.17366.1.S1_at

Description gb:AK066509.1
DB_XREF= gi:32976527
TID=Os.17366.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17366 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013106F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013069K23, full insert sequence.
FL= gb:AK066509.1 gb:AK067322.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5698011/11SWIB/MDM2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56930OsAffx.14448.1.S1_at11/114+33724952..33727453Beta-fructofuranosidase, insoluble isoenzyme 5, putative, expressed
LOC_Os04g56940OsAffx.14449.1.S1_at11/114+33729174..33729788hypothetical protein
LOC_Os04g56950Os.57112.1.S1_at11/114+33731186..33733503SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os04g56960OsAffx.14450.1.S1_at11/114+33734071..33735797expressed protein
LOC_Os04g56970Os.12173.1.S1_at11/114+33744604..33747684Cell division protein ftsZ homolog, chloroplast precursor, putative, expressed
LOC_Os04g56980Os.17366.1.S1_at11/114+33749545..33753475SWIB/MDM2 domain containing protein, expressed
LOC_Os04g56990Os.7512.1.S1_at11/114+33753705..33756668myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os04g57010Os.5810.1.S1_at11/114+33763910..33767186Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os04g57020Os.26386.1.S1_a_at11/114+33767327..33770868expressed protein
LOC_Os04g57030OsAffx.26642.1.S1_at11/114+33771024..33771479VQ motif family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17366.1.S1_at--416--6531Chr04:33752119..33752143 (25 bp)
GATTTCTGATGCACTAGCCAAGTTT
LOC_Os04g56980
Os.17366.1.S1_at--304--2391Chr04:33752810..33752834 (25 bp)
AAACTTCAGGAGCTGTTCGGCTGCG
LOC_Os04g56980
Os.17366.1.S1_at--1006--4611Chr04:33752832..33752856 (25 bp)
GCGAGAGCATTCCTAGTTCTGGATT
LOC_Os04g56980
Os.17366.1.S1_at--142--4931Chr04:33752866..33752890 (25 bp)
GCTTGCTCACCACTTCATTAAGGAA
LOC_Os04g56980
Os.17366.1.S1_at--3--7511Chr04:33753138..33753162 (25 bp)
GTGGTGCCAGATAGGCCTAACTTTA
LOC_Os04g56980
Os.17366.1.S1_at--676--8131Chr04:33753189..33753213 (25 bp)
GGACAGCTAGCTTATGTATCTTTTC
LOC_Os04g56980
Os.17366.1.S1_at--981--4331Chr04:33753247..33753271 (25 bp)
CCAGATTATTTGTGGTAGCCTGTAA
LOC_Os04g56980
Os.17366.1.S1_at--154--3151Chr04:33753276..33753300 (25 bp)
AATTCTACGTAGTGGCTACTGCCGC
LOC_Os04g56980
Os.17366.1.S1_at--540--1991Chr04:33753293..33753317 (25 bp)
ACTGCCGCAGTACTTTGGTGTAACC
LOC_Os04g56980
Os.17366.1.S1_at--382--9771Chr04:33753424..33753448 (25 bp)
TAATGGATTCACGACCTCTTGGTTA
LOC_Os04g56980
Os.17366.1.S1_at--394--3751Chr04:33753439..33753463 (25 bp)
CTCTTGGTTATTGAATGTGTGCCCC
LOC_Os04g56980
Target Sequence 
GATTTCTGATGCACTAGCCAAGTTTATTGGAATGGAAGGCACAGTGCCTCAAGATGATGCTTTGAGGTACCTTTGGGATT
ACATAAAAGCAAACCAACTTGAGGATGCTATTACTGGATCAATATTATGTGACTCAAAACTTCAGGAGCTGTTCGGCTGC
GAGAGCATTCCTAGTTCTGGATTATCAGAGTTGCTTGCTCACCACTTCATTAAGGAAACATAGCATATCCTCATTAACTG
ATCTAGGATTGCAGTGGTGCCAGATAGGCCTAACTTTACAATATGGTGTTCTTGACAAAAAAATGGACAGCTAGCTTATG
TATCTTTTCTATGCTCTGGATTATGAAGTTTGTCAGAGAAAACCAGATTATTTGTGGTAGCCTGTAATTTTAATTCTACG
TAGTGGCTACTGCCGCAGTACTTTGGTGTAACCTCTACAGAATTCGTAGCGTTAGTTTCTAAATGTCAAAATGTCTTTGG
CTGACTATGTAAAGNTAAGCTTTTTATTTGAGTGCCAGGTTGAACTTTTTAAAAAGCTGTAATGGATTCACGACCTCTTG
GTTATTGAATGTGTGCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17366.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis