Browse Element(s) Details


Os.17548.1.S1_at

Description gb:AK120785.1
DB_XREF= gi:37990408
TID=Os.17548.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17548 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023010H23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023010H23, full insert sequence.
FL= gb:AK120785.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4645011/11Helicase conserved C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46380Os.34151.1.S2_a_at11/112+28260700..28263757purine permease family protein, putative, expressed
LOC_Os02g46380Os.34151.1.S1_a_at11/112+28260700..28263757purine permease family protein, putative, expressed
LOC_Os02g46390OsAffx.12522.1.S1_at11/112+28264888..28265991hypothetical protein
LOC_Os02g46400OsAffx.24753.1.S1_at11/112+28266351..28266884expressed protein
LOC_Os02g46410OsAffx.2979.1.S1_at11/112+28267529..28268254hypothetical protein
LOC_Os02g46420Os.11599.1.S1_at11/112+28272454..28274001transposon protein, putative, unclassified, expressed
LOC_Os02g46440Os.51804.1.S1_at11/112+28283909..28285808ribosomal protein L18 family protein, putative, expressed
LOC_Os02g46440Os.51804.2.S1_x_at10/112+28283909..28285808ribosomal protein L18 family protein, putative, expressed
LOC_Os02g46440Os.51804.2.S1_at9/112+28283909..28285808ribosomal protein L18 family protein, putative, expressed
LOC_Os02g46450OsAffx.24754.1.S1_at11/112+28288126..28294011Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g46450Os.17548.1.S1_at11/112+28288126..28294011Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g46450OsAffx.24754.1.S1_x_at11/112+28288126..28294011Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g46450Os.16052.1.S1_at3/112+28288126..28294011Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g46460Os.9303.1.S1_at9/112+28306721..28310326POT family protein, expressed
LOC_Os02g46460OsAffx.24785.1.S1_x_at1/112+28306721..28310326POT family protein, expressed
LOC_Os02g46469NANA2+28313113..28313685NA

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009910biological_processnegative regulation of flower development
GO:0048441biological_processpetal development
GO:0048451biological_processpetal formation
GO:0016514cellular_componentSWI/SNF complex
GO:0003677molecular_functionDNA binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17548.1.S1_at--675--9451Chr02:28288784..28288808 (25 bp)
TCTGGATGTCATGCCCTTTCTTTTA
LOC_Os02g46450
Os.17548.1.S1_at--223--7971Chr02:28288781..28288805 (25 bp)
GGATGTCATGCCCTTTCTTTTAAAG
LOC_Os02g46450
Os.17548.1.S1_at--990--6911Chr02:28288569..28288593 (25 bp)
GTATGTATATTGGTAGCGTAGGCTC
LOC_Os02g46450
Os.17548.1.S1_at--1050--211Chr02:28288563..28288587 (25 bp)
ATATTGGTAGCGTAGGCTCTTTAGA
LOC_Os02g46450
Os.17548.1.S1_at--758--1611Chr02:28288555..28288579 (25 bp)
AGCGTAGGCTCTTTAGATGTAGAAT
LOC_Os02g46450
Os.17548.1.S1_at--1030--6271Chr02:28288540..28288564 (25 bp)
GATGTAGAATTGTATTCCCTCATTT
LOC_Os02g46450
Os.17548.1.S1_at--268--5211Chr02:28288534..28288558 (25 bp)
GAATTGTATTCCCTCATTTATGTTG
LOC_Os02g46450
Os.17548.1.S1_at--591--3571Chr02:28288520..28288544 (25 bp)
CATTTATGTTGAGGGAAGACTTTGT
LOC_Os02g46450
Os.17548.1.S1_at--14--8871Chr02:28288511..28288535 (25 bp)
TGAGGGAAGACTTTGTAACTTGGAA
LOC_Os02g46450
Os.17548.1.S1_at--546--8151Chr02:28288490..28288514 (25 bp)
GGAAATTTTGTTTAGCAGATGCCAA
LOC_Os02g46450
Os.17548.1.S1_at--543--3131Chr02:28288487..28288511 (25 bp)
AATTTTGTTTAGCAGATGCCAACAG
LOC_Os02g46450
Target Sequence 
TCTGGATGTCATGCCCTTTCTTTTAAAGNNGNCNNTTAGATTGTCAACGGNTAGGNAGCCCAAGGATACACAGANTTGNG
TCGCTCGCCNCACAGAATTGATGCAAGCTTGATGGCGATTGGTGGGAGCGAAGCTATTTGCTTGATGTGGTCACANTGAC
CTTACAAGCTTGGAGGGTTTGGTTAGCACTAATGGAGGCATTGGGTACTTTCTATACATGTATGTATATTGGTAGCGTAG
GCTCTTTAGATGTAGAATTGTATTCCCTCATTTATGTTGAGGGAAGACTTTGTAACTTGGAAATTTTGTTTAGCAGATGC
CAACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17548.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis