Browse Element(s) Details


Os.17577.3.S1_at

Description gb:AK064748.1
DB_XREF= gi:32974766
TID=Os.17577.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17577 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033099J19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-E11, full insert sequence.
FL= gb:AK064748.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2377010/11Ananain precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g23740NANA11+12918543..12919010retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g23750Os.41248.4.S1_x_at2/1111+12925217..12931646retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g23750Os.40288.1.S1_x_at1/1111+12925217..12931646retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g23760Os.46314.3.S1_at2/1111+12935638..12942174transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g23760OsAffx.23366.1.S1_at1/1111+12935638..12942174transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g23760OsAffx.23366.2.S1_s_at1/1111+12935638..12942174transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g23760OsAffx.24844.1.S1_at1/1111+12935638..12942174transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g23770Os.17577.3.S1_at10/1111+12942584..12944695Ananain precursor, putative, expressed
LOC_Os11g23770Os.17577.1.S1_x_at9/1111+12942584..12944695Ananain precursor, putative, expressed
LOC_Os11g23780OsAffx.7176.1.S1_at10/1111+12950614..12952231hypothetical protein
LOC_Os11g23790Os.8213.1.S1_at11/1111+12960269..12966519expressed protein
LOC_Os11g23800OsAffx.31892.1.S1_x_at1/1111+12969286..12970068retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g23800OsAffx.31892.5.S1_x_at1/1111+12969286..12970068retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0000325cellular_componentvacuole (sensu Magnoliophyta)
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17577.3.S1_at--223--6292Chr11:12944062..12944082 (21 bp)
GATAAGTTTCGAGCACGACGACCCA
LOC_Os11g23770
Os.17577.3.S1_at--663--5092Chr11:12944070..12944094 (25 bp)
GCACGACGACCCAACATATTCAAAA
LOC_Os11g23770
Os.17577.3.S1_at--593--10531Chr01:23643830..23644060 (25 bp)
TTCAGATGCTCTGTATAATGCAGCT
NONE
Os.17577.3.S1_at--309--7851Chr11:12944323..12944347 (25 bp)
GGTATAAGTTTTCAAGAACTCACCT
LOC_Os11g23770
Os.17577.3.S1_at--666--1851Chr11:12944357..12944381 (25 bp)
ACGACTCTCCTCTTGAAAGCGGTCA
LOC_Os11g23770
Os.17577.3.S1_at--759--3971Chr11:12944394..12944418 (25 bp)
CGGTGCCACATCTCCGGGAGCGGCA
LOC_Os11g23770
Os.17577.3.S1_at--846--5511Chr11:12944571..12944595 (25 bp)
GAAAATCCTTTGAGATGTACTACTA
LOC_Os11g23770
Os.17577.3.S1_at--52--6271Chr11:12944584..12944608 (25 bp)
GATGTACTACTACTGCGAAACCAAA
LOC_Os11g23770
Os.17577.3.S1_at--570--6452Chr11:12944628..12944652 (25 bp)
GATCAAACCAATAAGCACTCTCCCA
LOC_Os11g23770
Os.17577.3.S1_at--377--5111Chr11:12944642..12944666 (25 bp)
GCACTCTCCCATGTCAGTCATAAGG
LOC_Os11g23770
Os.17577.3.S1_at--621--8731Chr11:12944653..12944677 (25 bp)
TGTCAGTCATAAGGCTTCACAAGTG
LOC_Os11g23770
Target Sequence 
GATAAGTTTCGAGCACGACGACCCAACATATTCAAAATAAGTGATTTCAGATGCTCTGTATAATGCAGCTCTGGCTTCCT
CGAGGCCACAACAACAGCCTACTGTTGAGCAATAGCAATTCTACCAAAACTATGGGTACAGCAGATAAGGTATAAGTTTT
CAAGAACTCACCTGCGCCGGCCACGACTCTCCTCTTGAAAGCGGTCACCGCTGGCCTCCCGGTGCCACATCTCCGGGAGC
GGCACGTCGTCGGGGTCGCTTACATACTCCTCCTCCTCCTTGTCATCATCCCCGGTCCCCGCCGTCTCCACCTCCTCCGG
CGTCAGCGGCACCACCGGGGGCTTGCCGGCGGCGTGGAAGGAAGGCCAGCAAGATTAAAATAAGATTAAGTCACTAGAAA
ATCCTTTGAGATGTACTACTACTGCGAAACCAAAAATCGGAGCTGAAAATTAAGATCAAACCAATAAGCACTCTCCCATG
TCAGTCATAAGGCTTCACAAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17577.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis