Browse Element(s) Details


Os.17834.1.S1_at

Description gb:AK101310.1
DB_XREF= gi:32986519
TID=Os.17834.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17834 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033033O21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033033O21, full insert sequence.
FL= gb:AK101310.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3982011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39780OsAffx.5954.5.S1_x_at7/112+24028487..24035461retrotransposon protein, putative, unclassified
LOC_Os02g39780OsAffx.30294.1.S1_at7/112+24028487..24035461retrotransposon protein, putative, unclassified
LOC_Os02g39780OsAffx.5954.3.S1_x_at4/112+24028487..24035461retrotransposon protein, putative, unclassified
LOC_Os02g39780OsAffx.5954.1.S1_x_at1/112+24028487..24035461retrotransposon protein, putative, unclassified
LOC_Os02g39790Os.7972.1.S1_at11/112+24039375..24042429S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os02g39790Os.7972.1.S2_at11/112+24039375..24042429S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os02g39800NANA2+24044257..24047199SET domain containing protein
LOC_Os02g39810NANA2+24051352..24052178hypothetical protein
LOC_Os02g39820Os.17834.1.S1_at11/112+24053450..24056824expressed protein
LOC_Os02g39830OsAffx.12419.1.S1_at9/112+24057385..24060558Enhancer of rudimentary family protein, expressed
LOC_Os02g39840Os.15564.1.S1_at11/112+24062470..24068894Eukaryotic initiation factor, putative, expressed
LOC_Os02g39840OsAffx.467.1.S1_at1/112+24062470..24068894Eukaryotic initiation factor, putative, expressed
LOC_Os02g39850Os.7870.1.S1_at11/112+24074835..24078746Transferase family protein, expressed
LOC_Os02g39860NANA2+24081546..24083402retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17834.1.S1_at--237--3531Chr02:24056355..24056379 (25 bp)
CATCCAACTGGTAGGCATCGTGGTT
LOC_Os02g39820
Os.17834.1.S1_at--464--3531Chr02:24056370..24056394 (25 bp)
CATCGTGGTTAAGGCTTTGTCCGTT
LOC_Os02g39820
Os.17834.1.S1_at--965--10231Chr02:24056385..24056409 (25 bp)
TTTGTCCGTTGGCAGTGATCAGCTG
LOC_Os02g39820
Os.17834.1.S1_at--115--8851Chr02:24056400..24056424 (25 bp)
TGATCAGCTGCCATTCAGGCACTGA
LOC_Os02g39820
Os.17834.1.S1_at--244--131Chr02:24056412..24056436 (25 bp)
ATTCAGGCACTGATTCTGGTTTGAA
LOC_Os02g39820
Os.17834.1.S1_at--985--5331Chr02:24056443..24056467 (25 bp)
GAAGTAGCACTGACGACGCCATAGC
LOC_Os02g39820
Os.17834.1.S1_at--865--3171Chr02:24056509..24056533 (25 bp)
AATTGGTTTTGTTTGATCTGATATC
LOC_Os02g39820
Os.17834.1.S1_at--72--10271Chr02:24056546..24056570 (25 bp)
TTTGAAGATGCCTCCATGAACTATG
LOC_Os02g39820
Os.17834.1.S1_at--1136--8691Chr02:24056595..24056619 (25 bp)
TGTCCTGTTATTGCCGGGATTTTTT
LOC_Os02g39820
Os.17834.1.S1_at--354--51Chr02:24056630..24056654 (25 bp)
ATTGTACTTGCATGCTCACACTTAA
LOC_Os02g39820
Os.17834.1.S1_at--199--7331Chr02:24056694..24056718 (25 bp)
GTGCTTGTGCCAACAATCGGATTTA
LOC_Os02g39820
Target Sequence 
CATCCAACTGGTAGGCATCGTGGTTAAGGCTTTGTCCGTTGGCAGTGATCAGCTGCCATTCAGGCACTGATTCTGGTTTG
AAAATCTTGAAGTAGCACTGACGACGCCATAGCCAATTCTGTCNAACNGAAGNGGCAAAAAAAANTTTCCGGCTTCAATT
GGTTTTGTTTGATCTGATATCAGATGTCTTCATTTTGAAGATGCCTCCATGAACTATGGATTCATACAAGTAGATGNCCG
CNTGTCCTGTTATTGCCGGGATTTTTTTTNCCTCATCAATTGTACTTGCATGCTCACACTTAATAAGTCTTTTAGTCACT
GTAACGCCNGGATATCTAGGNTGTGCTTGTGCCAACAATCGGATTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17834.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis