Browse Element(s) Details


Os.17874.1.S1_at

Description gb:AK065778.1
DB_XREF= gi:32975796
TID=Os.17874.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17874 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013036C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013036C01, full insert sequence.
FL= gb:AK065778.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3401011/11Translation initiation factor IF-2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33970Os.8804.1.S1_at11/119+20053363..20057190expressed protein
LOC_Os09g33980Os.8886.1.S1_at11/119+20059116..20066102bromodomain protein 103, putative, expressed
LOC_Os09g33980Os.8886.1.S2_at11/119+20059116..20066102bromodomain protein 103, putative, expressed
LOC_Os09g33986Os.3709.1.S1_s_at11/119+20066479..20069004Proteasome A-type and B-type family protein, expressed
LOC_Os09g33986OsAffx.6478.1.S1_x_at11/119+20066479..20069004Proteasome A-type and B-type family protein, expressed
LOC_Os09g33986Os.3709.1.S1_at11/119+20066479..20069004Proteasome A-type and B-type family protein, expressed
LOC_Os09g33992Os.49347.1.S1_at11/119+20070072..20073169expressed protein
LOC_Os09g34000Os.47333.1.S1_at11/119+20073334..20076317expressed protein
LOC_Os09g34010Os.17874.1.S1_at11/119+20077712..20082152Translation initiation factor IF-2, putative, expressed
LOC_Os09g34020NANA9+20082610..20082858expressed protein
LOC_Os09g34030NANA9+20083937..20084414expressed protein
LOC_Os09g34040Os.9589.1.S1_at11/119+20086132..20090090TBC domain containing protein, expressed
LOC_Os09g34050NANA9+20090882..20091714hypothetical protein
LOC_Os09g34060Os.54250.1.S1_at11/119+20093715..20098128Transcription factor RF2a, putative, expressed
LOC_Os09g34070Os.20697.1.S1_at11/119+20106823..20114088RNA recognition motif family protein, expressed
LOC_Os09g34070Os.38098.1.S1_at2/119+20106823..20114088RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0003743molecular_functiontranslation initiation factor activity
GO:0008135molecular_functiontranslation factor activity, nucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17874.1.S1_at--498--8131Chr09:20081716..20081740 (25 bp)
GGACATCGTCCAGTGCTTGGAGCAG
LOC_Os09g34010
Os.17874.1.S1_at--457--3611Chr09:20081731..20081755 (25 bp)
CTTGGAGCAGGTTATCAGGAAGCCC
LOC_Os09g34010
Os.17874.1.S1_at--127--6811Chr09:20081814..20081838 (25 bp)
GTTTTCTGCTTCCATTCGTGATCAA
LOC_Os09g34010
Os.17874.1.S1_at--1017--4911Chr09:20081821..20081845 (25 bp)
GCTTCCATTCGTGATCAACTAACCA
LOC_Os09g34010
Os.17874.1.S1_at--245--3511Chr09:20081968..20081992 (25 bp)
CATGGTTAATCTTGTTCAGGTGCTT
LOC_Os09g34010
Os.17874.1.S1_at--524--431Chr09:20081976..20082000 (25 bp)
ATCTTGTTCAGGTGCTTGTGTTTGT
LOC_Os09g34010
Os.17874.1.S1_at--763--7431Chr09:20081993..20082017 (25 bp)
GTGTTTGTTGTACATTCCTGCAGTT
LOC_Os09g34010
Os.17874.1.S1_at--149--9891Chr09:20082003..20082027 (25 bp)
TACATTCCTGCAGTTTCCACAAGTT
LOC_Os09g34010
Os.17874.1.S1_at--724--4591Chr09:20082030..20082054 (25 bp)
GCGAATAACGTGGATTACTGGATTA
LOC_Os09g34010
Os.17874.1.S1_at--883--171Chr09:20082118..20082142 (25 bp)
ATTTTTGCCGGTTCATGCGAGTCCA
LOC_Os09g34010
Os.17874.1.S1_at--457--3531Chr09:20082131..20082152 (22 bp)
CATGCGAGTCCAGGCTCTGTTGAGC
LOC_Os09g34010
Target Sequence 
GGACATCGTCCAGTGCTTGGAGCAGGTTATCAGGAAGCCCAAGTTNATCTCAACACAAAGCGGCGCGGTTCGGATAGAAT
GCTGATAGATGTTTAGTTGTTTTCTGCTTCCATTCGTGATCAACTAACCAAGATTTTGGCAGTGGAACAAGAGGGAGATG
NTCAAGTTGGTGCGCTTATTANTTTCTCGCCAACAAACTTGTTGCTGCAANCAATTTCAAACAGAAACCTCTATTCATAT
ATGAGATGAAGACATGGTTAATCTTGTTCAGGTGCTTGTGTTTGTTGTACATTCCTGCAGTTTCCACAAGTTNTGCGAAT
AACGTGGATTACTGGATTAGTGAAAAGGTTATTGTTATTGACTTAATTATTATTACTGTATAATTGCAGCCACNGAAAGG
CCATTTTTGCCGGTTCATGCGAGTCCAGGCTCTGTTGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17874.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis