Browse Element(s) Details


Os.18008.1.S1_at

Description gb:CB653148
DB_XREF= gi:29656873
DB_XREF=OSJNEc03O07.r
CLONE=OSJNEc03O07
TID=Os.18008.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.18008 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0409B08.16 (P0409B08.16), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0366010/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03620Os.29768.1.S1_at11/111+1483202..1485699Multicopper oxidase family protein, expressed
LOC_Os01g03630Os.31788.1.S1_at11/111+1487296..1489948Multicopper oxidase family protein, expressed
LOC_Os01g03630Os.18067.1.S1_at1/111+1487296..1489948Multicopper oxidase family protein, expressed
LOC_Os01g03640OsAffx.10896.1.S1_at11/111+1494345..1497143Multicopper oxidase family protein, expressed
LOC_Os01g03650Os.845.1.A1_at10/111+1500813..1504859sufB/sufD domain containing protein, expressed
LOC_Os01g03650Os.845.2.A1_x_at9/111+1500813..1504859sufB/sufD domain containing protein, expressed
LOC_Os01g03650Os.845.2.A1_at5/111+1500813..1504859sufB/sufD domain containing protein, expressed
LOC_Os01g03660Os.18008.1.S1_at10/111+1505037..1509554Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g03660OsAffx.23102.1.S1_at10/111+1505037..1509554Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g03670Os.20305.1.S1_at11/111+1509940..1511264NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g03680Os.5045.1.S1_at11/111+1512639..1513529Bowman-Birk serine protease inhibitor family protein, expressed
LOC_Os01g03690Os.53501.1.S1_at11/111+1515049..1518438serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os01g03710Os.34778.1.S1_at11/111+1530937..1536422mannose-6-phosphate isomerase, class I family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009611biological_processresponse to wounding
GO:0009800biological_processcinnamic acid biosynthesis
GO:0009845biological_processseed germination
GO:0009892biological_processnegative regulation of metabolism
GO:0010026biological_processtrichome differentiation (sensu Magnoliophyta)
GO:0010224biological_processresponse to UV-B
GO:0016481biological_processnegative regulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18008.1.S1_at--82--1031Chr01:1507338..1507362 (25 bp)
AGGTATCAACCCAAATGCTCTTAGA
LOC_Os01g03660
Os.18008.1.S1_at--617--2351Chr01:1507385..1507409 (25 bp)
AAAGCTCTCTTAGACTATACCCTGC
LOC_Os01g03660
Os.18008.1.S1_at--960--9971Chr01:1507395..1507419 (25 bp)
TAGACTATACCCTGCACAAAATCGT
LOC_Os01g03660
Os.18008.1.S1_at--1138--7871Chr01:1507420..1507444 (25 bp)
GGTTCTAAGAAATCGGCCTGTTCAC
LOC_Os01g03660
Os.18008.1.S1_at--278--8791Chr01:1507438..1507462 (25 bp)
TGTTCACCACCGCAGGAGAAACTAT
LOC_Os01g03660
Os.18008.1.S1_at--64--1231Chr01:1507519..1507543 (25 bp)
AGTTCTGGCAAGATGGGAGCCCCAA
LOC_Os01g03660
Os.18008.1.S1_at--510--5331Chr01:1507549..1507573 (25 bp)
GAAGTCATTTGTACATATTCCACAA
LOC_Os01g03660
Os.18008.1.S1_at--309--2471Chr01:1507578..1507602 (25 bp)
AACACTGCAGTGGAATCCTAGTTAT
LOC_Os01g03660
Os.18008.1.S1_at--594--8491Chr01:1507635..1507659 (25 bp)
TGGCATCACGATTTAGAGGTAACAT
LOC_Os01g03660
Os.18008.1.S1_at--465--4171Chr01:1507664..1507688 (25 bp)
CCCACATCAGTAGTTTGAGTTTGCT
LOC_Os01g03660
Os.18008.1.S1_at--687--3411NONE
CAGAAGCACAGTGTCCTGGATGGTT
NONE
Target Sequence 
AGGTATCAACCCAAATGCTCTTAGAAGACAAGGAATTGATCATCTTAAAAGCTCTCTTAGACTATACCCTGCACAAAATC
GTGGTTCTAAGAAATCGGCCTGTTCACCACCGCAGGAGAAACTATATACACATGAACTAGTTTAACAAATTTAGTTGTGC
AACTAAAAGTTTATAGAATTCAGTTCTGGCAAGATGGGAGCCCCAAATTTTGAAGTCATTTGTACATATTCCACAAGAAC
AACACTGCAGTGGAATCCTAGTTATAGCTGATGTACATATACAAGNCAAATTTCTTATGGCATCACGATTTAGAGGTAAC
ATGTANCCCACATCAGTAGTTTGAGTTTGCTAAGACAGAAGCACAGTGTCCTGGATGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18008.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis