Browse Element(s) Details


Os.18031.1.S1_at

Description gb:AK058549.1
DB_XREF= gi:32968567
TID=Os.18031.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18031 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-017-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-017-C07, full insert sequence.
FL= gb:AK058549.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1216011/11AAA-type ATPase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12090OsAffx.20128.2.S1_s_at11/116+6474162..6478071GTP-binding protein SAR2, putative, expressed
LOC_Os06g12090OsAffx.20128.1.S1_at7/116+6474162..6478071GTP-binding protein SAR2, putative, expressed
LOC_Os06g12100Os.47936.1.A1_at11/116+6478284..6479981mTERF family protein, expressed
LOC_Os06g12110Os.5964.1.S1_at11/116+6481367..6482824mTERF family protein, expressed
LOC_Os06g12120Os.17766.1.S1_at11/116+6483044..6487554BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os06g12130NANA6+6490223..6490714hypothetical protein
LOC_Os06g12140OsAffx.4808.1.S1_at10/116+6491885..6493715hypothetical protein
LOC_Os06g12140OsAffx.16999.1.S1_at2/116+6491885..6493715hypothetical protein
LOC_Os06g12150Os.56273.1.S1_at11/116+6494003..6496899Shikimate kinase, chloroplast precursor, putative, expressed
LOC_Os06g12160Os.18031.1.S1_at11/116+6502744..6513200AAA-type ATPase family protein, putative, expressed
LOC_Os06g12170Os.50577.1.A1_a_at11/116+6514580..6518178expressed protein
LOC_Os06g12170Os.20350.1.S1_at1/116+6514580..6518178expressed protein
LOC_Os06g12180NANA6+6520988..6522339Salt stress-induced protein, putative, expressed
LOC_Os06g12190NANA6+6533747..6534898Glutaredoxin family protein, expressed
LOC_Os06g12200OsAffx.4810.1.S1_at11/116+6536950..6537799hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18031.1.S1_at--191--4651Chr06:6503542..6503566 (25 bp)
GCGTACAGACCAGTTCATGAGCTTC
LOC_Os06g12160
Os.18031.1.S1_at--117--5131Chr06:6503200..6503220 (21 bp)
GCAAAGGTAAGTCCATCCGTCGCTT
LOC_Os06g12160
Os.18031.1.S1_at--227--10751Chr06:6503175..6503199 (25 bp)
TTGACGCCACGAGCATGAACGAGTT
LOC_Os06g12160
Os.18031.1.S1_at--829--371Chr06:6503105..6503129 (25 bp)
ATCACCATTTGGGTTCGGCAGCTAA
LOC_Os06g12160
Os.18031.1.S1_at--466--9611Chr06:6503044..6503068 (25 bp)
TCATCTGCATCATTAGCGAGCTCCA
LOC_Os06g12160
Os.18031.1.S1_at--731--4611Chr06:6503029..6503053 (25 bp)
GCGAGCTCCAACTTTAGCCATAGGA
LOC_Os06g12160
Os.18031.1.S1_at--200--3111Chr06:6502997..6503021 (25 bp)
AATAGGCGCTTCTTTCTCTGATGTG
LOC_Os06g12160
Os.18031.1.S1_at--525--10672Chr09:11792108..11792242 (24 bp)
TTCCTTTTCACCTATATCCTATTTC
NONE
Os.18031.1.S1_at--770--371Chr06:6502899..6502923 (25 bp)
ATCACACCAAATTTTCCTGAGCCTT
LOC_Os06g12160
Os.18031.1.S1_at--619--4231Chr06:6502860..6502884 (25 bp)
CCGTCCTCCTGTTGTAATTTTGATG
LOC_Os06g12160
Os.18031.1.S1_at--804--3131Chr06:6502845..6502869 (25 bp)
AATTTTGATGCATCCCTCTGTTGAA
LOC_Os06g12160
Target Sequence 
GCGTACAGACCAGTTCATGAGCTTCTAGAAGAAGAAAAGGGAGGCGTTAGTGGCACAAAAATATCTTTGAGGCCCTTAAA
GTTGGAGGATTTTGTGCAAGCAAAAGCAAAGGTAAGTCCATCCGTCGCTTTTGACGCCACGAGCATGAACGAGTTACGAA
AATGGAACGAGCAGTACGGGGAAGGTGGAAGCAGGAGTAAATCACCATTTGGGTTCGGCAGCTAACATTGTTCTGTCAGT
ATTTTTAGTTCTCACATTGTATCATCTGCATCATTAGCGAGCTCCAACTTTAGCCATAGGAAGCCAGCAATAGGCGCTTC
TTTCTCTGATGTGCCCGCCTCCTTTCCTTTTCACCTATATCCTATTTCAGAGTTATGTGATCCCTGTATCAATAGAGAAA
CACCTAATCACACCAAATTTTCCTGAGCCTTTTTGAACAAGTGCTCCGTCCTCCTGTTGTAATTTTGATGCATCCCTCTG
TTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18031.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis