Browse Element(s) Details


Os.18138.1.S1_at

Description gb:AK069865.1
DB_XREF= gi:32979889
TID=Os.18138.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18138 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-045-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023037M15, full insert sequence.
FL= gb:AK069865.1 gb:AK104886.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0589010/11MSP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05850OsAffx.5721.1.S1_s_at11/118+3139225..3141068Sm protein
LOC_Os08g05850Os.55478.1.S1_at1/118+3139225..3141068Sm protein
LOC_Os08g05860OsAffx.29055.1.S1_at11/118+3145034..3145464hypothetical protein
LOC_Os08g05870OsAffx.17522.1.S1_at11/118+3154294..3158875Oxysterol-binding protein, expressed
LOC_Os08g05880Os.11715.2.S1_x_at11/118+3160418..3164209U3 small nucleolar ribonucleoprotein protein IMP4, putative, expressed
LOC_Os08g05880OsAffx.30567.1.S1_at1/118+3160418..3164209U3 small nucleolar ribonucleoprotein protein IMP4, putative, expressed
LOC_Os08g05880Os.10162.1.S1_at1/118+3160418..3164209U3 small nucleolar ribonucleoprotein protein IMP4, putative, expressed
LOC_Os08g05890Os.18138.1.S1_at10/118+3165261..3169089MSP domain containing protein, expressed
LOC_Os08g05900OsAffx.29056.1.S1_at11/118+3169173..3169640hypothetical protein
LOC_Os08g05910Os.7458.1.S1_a_at11/118+3175990..3184094Nitrate/chlorate transporter, putative, expressed
LOC_Os08g05920Os.45902.1.A1_x_at4/118+3186045..3190276retrotransposon protein, putative, unclassified
LOC_Os08g05920Os.56372.1.S1_at1/118+3186045..3190276retrotransposon protein, putative, unclassified
LOC_Os08g05920OsAffx.10222.1.S1_x_at1/118+3186045..3190276retrotransposon protein, putative, unclassified
LOC_Os08g05930Os.10703.2.S1_x_at1/118+3193079..3198727retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0046907biological_processintracellular transport
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0005198molecular_functionstructural molecule activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18138.1.S1_at--962--2911NONE
AAGGAGAGGCCCACAGAGCCATCGT
NONE
Os.18138.1.S1_at--424--3551Chr08:3168098..3168122 (25 bp)
CATCGTCCATGATCTCCAAACTAAA
LOC_Os08g05890
Os.18138.1.S1_at--357--5331Chr08:3168156..3168637 (25 bp)
GAAGTTACGACATGAGCTGGAGCTC
LOC_Os08g05890
Os.18138.1.S1_at--985--1471Chr08:3168653..3168677 (25 bp)
AGCAAAAGCAGTGGCGGTTTCTCCC
LOC_Os08g05890
Os.18138.1.S1_at--429--10591Chr08:3168702..3168726 (25 bp)
TTCTCGGCATCATCGTGGGCTACAT
LOC_Os08g05890
Os.18138.1.S1_at--843--5931Chr08:3168837..3168861 (25 bp)
GAGCACCTGTCCTAACTTGTAACAA
LOC_Os08g05890
Os.18138.1.S1_at--710--3091Chr08:3168863..3168887 (25 bp)
AATACTCCTCCTAGATGCCATGGTT
LOC_Os08g05890
Os.18138.1.S1_at--355--151Chr08:3168895..3168919 (25 bp)
ATTATGGTGGTTTTACGCTTCGCTG
LOC_Os08g05890
Os.18138.1.S1_at--833--7331Chr08:3168973..3168997 (25 bp)
GTGCAACTGTTTGACATTCTCCATA
LOC_Os08g05890
Os.18138.1.S1_at--278--3131Chr08:3169049..3169073 (25 bp)
AATTTCTCTTCCAGTCACATTGGCA
LOC_Os08g05890
Os.18138.1.S1_at--710--2071Chr08:3169065..3169089 (25 bp)
ACATTGGCAGGCAGTGCTTGATCTC
LOC_Os08g05890
Target Sequence 
AAGGAGAGGCCCACAGAGCCATCGTCCATGATCTCCAAACTAAATGAGGAGAATAGGGTTGCTATTCAGCAAAACCAGAA
GTTACGACATGAGCTGGAGCTCCTACGGAAAGAAAGCAGCAAAAGCAGTGGCGGTTTCTCCCTCACCTTCTTGGCCATCG
TTGGTCTTCTCGGCATCATCGTGGGCTACATCCTCAAGAAGACATAGAAGAGGTAGAGGTTCCCAACAAAAGTTATACTC
CCAGGAAAGGATACCCCTCATATTGGTATGCCGCGCATCGTGTTTTTTTCCCTCCTAAAAGGAGCACCTGTCCTAACTTG
TAACAACAATACTCCTCCTAGATGCCATGGTTTGTGTACATTATGGTGGTTTTACGCTTCGCTGCGGTTTTTTTTTTTTT
TTTACATTGACTAGGCTTGATTTTTAAGAGTTTTAACTGGTGCAACTGTTTGACATTCTCCATAANNNNTTATTCTTTCT
TTCTGATCAATTTATCATCATACTGTTAAACTTTAAATTTCTCTTCCAGTCACATTGGCAGGCAGTGCTTGATCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18138.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis